View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_2 (Length: 958)
Name: NF13108_low_2
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 30725166 - 30725759
Alignment:
| Q |
18 |
ataaccatgtaggatgagaagagtttaaatttatatccgttttgctgcaacaaatatgtaacaatattctcaaccatttagagccttacaatgatgaaga |
117 |
Q |
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| T |
30725166 |
ataaccatgtaggatgagacgagtttaaatttatacccgttttgctgcaacaaatatgtaacaatattctcaatcatttagagccttacaatgatgaaga |
30725265 |
T |
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| Q |
118 |
attcactaatgcgtctgggtatgtatgaacttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagttctcga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30725266 |
attcactaatgcgtctgggtatgtatgaacttcttcgtgagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagttctcga |
30725365 |
T |
|
| Q |
218 |
aagattgcgatgcttgatttaggtttgctagaggagccattcttttcaattctgaaagatacatgaggcaccttacgtattcacgaagttatcaattatg |
317 |
Q |
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| T |
30725366 |
aagattgcgatgcttgatttaggtttgctagaggagccattcttttcaattctgaaagatacatgaggcaccttacgaattcaccaagttatcaattatg |
30725465 |
T |
|
| Q |
318 |
tgctgcgacagaaacaacattatggcagagttatttgggattctatacagtttgcagctgattgtcgaacaaaggtttgtcccatgttgtgactgaaacc |
417 |
Q |
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| T |
30725466 |
tgctgcgacagaaacaacattatggcagagttatttgggattctatacagtttgcagctgattgtcgaac-aaggtttgtccaatgttgtgactgaaacc |
30725564 |
T |
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| Q |
418 |
gattccggggaagttttgac--------------------ttgctaatcatcgttcgtcgacttgcaattgcaaagatacaaatactctagttaagatga |
497 |
Q |
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| T |
30725565 |
gattccggggaggttttgactattatgcagacctgttgtgttcctaatcatcgttggtcgac------ttgcaaagatacaaatactctagttaagatga |
30725658 |
T |
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| Q |
498 |
ttggttgtgtggagggaacttattcctcaagnnnnnnnntcaagtcgctgacacttttgccaaagagcgtttaaacagcagatgaagatgcatattttta |
597 |
Q |
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| T |
30725659 |
ttggttgtgtggagggaacttattcctcaagaaaaaaaatcaagtcgcagacacttttgccaaagagggtttaaacagcagatgaagatgcatattttta |
30725758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 590 - 915
Target Start/End: Original strand, 30726188 - 30726510
Alignment:
| Q |
590 |
tatttttattaatgttcccatttttgctattcaacctttgaagctgataatttggatacnnnnnnnnnccaaaggttgttagtttgattcatggcgggtt |
689 |
Q |
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| T |
30726188 |
tatttttattaatgttcccatttttgctattcaacctttgaagctcataatttggatactttttttt-ccaaaggttgttagtttgattcatgg--ggtt |
30726284 |
T |
|
| Q |
690 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaatttagaaaattgataagttcgacctac |
789 |
Q |
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| T |
30726285 |
attctcttttgttcaatatatcttgcttataaaagaaaagtttgaaactatggtagataagttttaaagacaatttagaaaattgataagttcgacctac |
30726384 |
T |
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| Q |
790 |
aaaattttctcaatgnnnnnnnagaggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatggataataaaaaattgagttgagga |
889 |
Q |
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| T |
30726385 |
aaaattttctcaatgtttttttagtggagttttttcaatgttaaatgcaataaccaatttacaaaattgataaatacaaaataaaaaattgagttgagga |
30726484 |
T |
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| Q |
890 |
gctaattcggaaaacaataaaagcag |
915 |
Q |
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| T |
30726485 |
gctaattcggaaaacaataaaagcag |
30726510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 23675348 - 23675284
Alignment:
| Q |
148 |
ttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagtt |
212 |
Q |
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| T |
23675348 |
ttcttcataaggctctaaattgcatgcataacaaaattttctcaatcatttggagcttggaagtt |
23675284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 23859463 - 23859527
Alignment:
| Q |
148 |
ttcttcataagccttaaaattgtatgcataacagaattttctcaatcatttggagcttgaaagtt |
212 |
Q |
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| T |
23859463 |
ttcttcataaggctctaaattgcatgcataacaaaattttctcaatcatttggagcttggaagtt |
23859527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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