View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_20 (Length: 355)

Name: NF13108_low_20
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_20
NF13108_low_20
[»] chr6 (57 HSPs)
chr6 (18-176)||(25538945-25539103)
chr6 (18-176)||(26143270-26143428)
chr6 (18-172)||(25580128-25580282)
chr6 (219-332)||(25579968-25580081)
chr6 (18-176)||(25483462-25483619)
chr6 (218-336)||(26056171-26056289)
chr6 (218-336)||(26076141-26076259)
chr6 (219-336)||(25481987-25482104)
chr6 (219-332)||(26143114-26143227)
chr6 (21-176)||(26056325-26056479)
chr6 (21-176)||(26076295-26076449)
chr6 (218-332)||(25538789-25538903)
chr6 (21-176)||(25511345-25511495)
chr6 (219-335)||(26646725-26646838)
chr6 (219-335)||(26752693-26752806)
chr6 (220-337)||(27337894-27338008)
chr6 (220-337)||(27398634-27398748)
chr6 (243-332)||(27214669-27214758)
chr6 (243-332)||(27234470-27234559)
chr6 (18-162)||(26646894-26647039)
chr6 (218-337)||(26656233-26656349)
chr6 (18-162)||(26752862-26753007)
chr6 (218-337)||(26762204-26762320)
chr6 (243-322)||(28781398-28781477)
chr6 (243-322)||(28786537-28786616)
chr6 (243-322)||(28792658-28792737)
chr6 (218-297)||(27679230-27679309)
chr6 (218-288)||(27677438-27677508)
chr6 (218-288)||(27706226-27706296)
chr6 (251-336)||(26617867-26617952)
chr6 (251-336)||(26723795-26723880)
chr6 (218-275)||(27592844-27592901)
chr6 (218-289)||(26802734-26802805)
chr6 (45-95)||(27337728-27337778)
chr6 (45-95)||(27398468-27398518)
chr6 (245-330)||(26824091-26824176)
chr6 (47-119)||(27427263-27427335)
chr6 (42-119)||(27604348-27604427)
chr6 (265-332)||(26848909-26848976)
chr6 (42-108)||(27592665-27592731)
chr6 (42-108)||(27679422-27679488)
chr6 (218-288)||(27698318-27698388)
chr6 (42-119)||(26802904-26802981)
chr6 (251-336)||(26811754-26811839)
chr6 (265-338)||(26959409-26959482)
chr6 (18-119)||(27214911-27215012)
chr6 (47-108)||(27706053-27706114)
chr6 (233-289)||(27718218-27718274)
chr6 (258-298)||(28098221-28098261)
chr6 (42-106)||(28781575-28781639)
chr6 (42-106)||(28786712-28786776)
chr6 (42-106)||(28792833-28792897)
chr6 (218-253)||(25511268-25511303)
chr6 (265-340)||(26635931-26636006)
chr6 (265-340)||(26741897-26741972)
chr6 (42-108)||(27698230-27698296)
chr6 (280-337)||(28234807-28234864)
[»] chr1 (3 HSPs)
chr1 (244-336)||(28127516-28127608)
chr1 (244-336)||(28164200-28164292)
chr1 (245-335)||(268195-268285)
[»] chr4 (6 HSPs)
chr4 (220-335)||(18723901-18724013)
chr4 (220-335)||(18731320-18731432)
chr4 (243-335)||(18655313-18655405)
chr4 (220-335)||(18679383-18679495)
chr4 (246-335)||(18699239-18699328)
chr4 (47-119)||(18074220-18074292)
[»] scaffold0419 (2 HSPs)
scaffold0419 (245-317)||(7789-7861)
scaffold0419 (42-99)||(7968-8025)
[»] scaffold0277 (3 HSPs)
scaffold0277 (245-317)||(13483-13555)
scaffold0277 (245-317)||(4522-4594)
scaffold0277 (42-99)||(13319-13376)
[»] scaffold0003 (1 HSPs)
scaffold0003 (47-119)||(60028-60100)
[»] scaffold0349 (2 HSPs)
scaffold0349 (233-319)||(3259-3345)
scaffold0349 (233-288)||(14195-14250)
[»] chr2 (1 HSPs)
chr2 (258-298)||(3279986-3280026)
[»] scaffold0038 (1 HSPs)
scaffold0038 (280-337)||(34969-35026)


Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 57)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 25539103 - 25538945
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25539103 agataagttagaacataaactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaatttttttgacatataaataacttacacttgt 25539004  T
Q  118 tttagaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  25539003 tttaaaaacattaatagaaaatgtgttcctatttaagttttaagagtagattatttagg 25538945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 26143428 - 26143270
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26143428 agataaattagaaaatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 26143329  T
Q  118 tttagaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  26143328 tttaaaaacattaatagaaaatgtgttcctatttaagctttgagagtagattatttagg 26143270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 25580282 - 25580128
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||| |||||| ||||||||||||||    
T  25580282 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaaaatattattcaattctaccttttttgaaatataattaacttacacttgt 25580183  T
Q  118 tttagaaacattaatagaaaatatgttcctatttaagctttaagagtagattatt 172  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  25580182 tttaaaaacattaatagaaaatctgttcctatttaagcttgaagattagattatt 25580128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 25580081 - 25579968
Alignment:
Q  219 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25580081 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagctatcttccattgacgcaatcgctccatgttt 25579982  T
Q  319 tcctcgttattttg 332  Q
    | ||||||||||||    
T  25579981 ttctcgttattttg 25579968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 25483619 - 25483462
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25483619 agataagttagaacatacactaaaaccaaaatcatatccatgcattgagaatatatcatgcaattctaacttttttgacatataaataacttacacttgt 25483520  T
Q  118 tttagaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    |||| || ||||||||| ||||   | | | ||||||||||||||||||||||||||||    
T  25483519 tttaaaaccattaatag-aaatcgctccatgtttaagctttaagagtagattatttagg 25483462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 336
Target Start/End: Complemental strand, 26056289 - 26056171
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26056289 atttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtt 26056190  T
Q  318 ttcctcgttattttggaac 336  Q
    || ||||||||||||||||    
T  26056189 tttctcgttattttggaac 26056171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 336
Target Start/End: Complemental strand, 26076259 - 26076141
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26076259 atttaagtaaagtagggtactcatgaggactataatgatagccggacaagttagcagcttgagtaagagccatcttccattgacgcaatcgctccatgtt 26076160  T
Q  318 ttcctcgttattttggaac 336  Q
    || ||||||||||||||||    
T  26076159 tttctcgttattttggaac 26076141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 25482104 - 25481987
Alignment:
Q  219 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttt 318  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25482104 tttaagtaaagtggggtactcatgaggactataatgatagccggacaaattagcagcttgagtaagagccatcttccattgacgcaatcgctccatgttt 25482005  T
Q  319 tcctcgttattttggaac 336  Q
    | ||||||||||||||||    
T  25482004 ttctcgttattttggaac 25481987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 219 - 332
Target Start/End: Complemental strand, 26143227 - 26143114
Alignment:
Q  219 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  26143227 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgttt 26143128  T
Q  319 tcctcgttattttg 332  Q
    | ||||||||||||    
T  26143127 ttctcgttattttg 26143114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 26056479 - 26056325
Alignment:
Q  21 taagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgtttt 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26056479 taagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagtttt 26056380  T
Q  121 agaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    | || |||| |||| ||||   | | | ||||||||||||||||||||||||||||    
T  26056379 aaaaccattgatag-aaatccctccatgtttaagctttaagagtagattatttagg 26056325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 26076449 - 26076295
Alignment:
Q  21 taagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgtttt 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26076449 taagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaattctaacttttttgacatataaataacttacactagtttt 26076350  T
Q  121 agaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    | || |||| |||| ||||   | | | ||||||||||||||||||||||||||||    
T  26076349 aaaaccattgatag-aaatccctccatgtttaagctttaagagtagattatttagg 26076295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 218 - 332
Target Start/End: Complemental strand, 25538903 - 25538789
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  25538903 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttggataagagctatcttccattgacgcaatcgctccatgtt 25538804  T
Q  318 ttcctcgttattttg 332  Q
    || ||| ||||||||    
T  25538803 tttctcattattttg 25538789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 25511495 - 25511345
Alignment:
Q  21 taagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgtttt 120  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||    ||||||||||||||||||    
T  25511495 taagttagaacatacactagaatcaaaatcacatccatgtattgataatatattatgcaattctaaatttttttacat----ataacttacacttgtttt 25511400  T
Q  121 agaaacattaatagaaaatatgttcctatttaagctttaagagtagattatttagg 176  Q
    | || ||||||||| ||||   | | | ||||||||||||||||||||||||||||    
T  25511399 aaaaccattaatag-aaatcgctccatgtttaagctttaagagtagattatttagg 25511345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 335
Target Start/End: Complemental strand, 26646838 - 26646725
Alignment:
Q  219 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttt 318  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||| |||||    
T  26646838 tttaagtaaagtggggtaccca---ggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgttt 26646742  T
Q  319 tcctcgttattttggaa 335  Q
    | || ||||||||||||    
T  26646741 ttcttgttattttggaa 26646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 335
Target Start/End: Complemental strand, 26752806 - 26752693
Alignment:
Q  219 tttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttt 318  Q
    ||||||||||||||||||||||   ||||||||||| || ||||||||||||||||||||||| ||||||| |||||||||| ||||||| ||| |||||    
T  26752806 tttaagtaaagtggggtaccca---ggactataatggtatccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgttccttgttt 26752710  T
Q  319 tcctcgttattttggaa 335  Q
    | || ||||||||||||    
T  26752709 ttcttgttattttggaa 26752693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 27337894 - 27338008
Alignment:
Q  220 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||||||||||||||| |||   ||| |||| | |||||| ||||||||||||||||||||||||||||||||||    ||| | |||||||||||    
T  27337894 ttaagtaaagtggggtacccttga---ctaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgtttt 27337990  T
Q  320 cctcgttattttggaact 337  Q
    ||| ||||||||||||||    
T  27337991 ccttgttattttggaact 27338008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 337
Target Start/End: Original strand, 27398634 - 27398748
Alignment:
Q  220 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||||||||||||||| |||   ||| |||| | |||||| ||||||||||||||||||||||||||||||||||    ||| | |||||||||||    
T  27398634 ttaagtaaagtggggtacccttga---ctaaaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgtttt 27398730  T
Q  320 cctcgttattttggaact 337  Q
    ||| ||||||||||||||    
T  27398731 ccttgttattttggaact 27398748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 332
Target Start/End: Complemental strand, 27214758 - 27214669
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttg 332  Q
    |||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||   |||| |||||||||||||||| |||||||||    
T  27214758 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttg 27214669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 27234470 - 27234559
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttg 332  Q
    |||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||   |||| |||||||||||||||| |||||||||    
T  27234470 aggactataatgatagccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttg 27234559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 26647039 - 26646894
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    ||||||||||| |||| ||| || |||| ||  ||||  |||||  ||||||||||||| || |||||||| ||||||||||||||||| ||| |||||     
T  26647039 agataagttagtacatgcaccaacatcacaaatacattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttg- 26646941  T
Q  118 tttagaaacattaatagaaaatatg---ttcctatttaagctttaaga 162  Q
    |||| ||||||||||| ||||||||   ||||||||||||||||||||    
T  26646940 tttaaaaacattaata-aaaatatgtgtttcctatttaagctttaaga 26646894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 26656349 - 26656233
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    |||||||||||||||||||||| |||   ||| |||| ||||| |||||||| ||||||| ||| |||||||||||||||||   ||| | || ||||||    
T  26656349 atttaagtaaagtggggtacccttga---ctacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgtt 26656253  T
Q  318 ttcctcgttattttggaact 337  Q
    ||||| ||||||||||||||    
T  26656252 ttccttgttattttggaact 26656233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 26753007 - 26752862
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    ||||||||||| |||| ||| || |||| ||  ||||  |||||  ||||||||||||| || |||||||| ||||||||||||||||| ||| |||||     
T  26753007 agataagttagtacatgcaccaacatcacaaatacattgatgtaccgagaatatattatacagttctaactcttttgacatataaataatttatacttg- 26752909  T
Q  118 tttagaaacattaatagaaaatatg---ttcctatttaagctttaaga 162  Q
    |||| ||||||||||| ||||||||   ||||||||||||||||||||    
T  26752908 tttaaaaacattaata-aaaatatgtgtttcctatttaagctttaaga 26752862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 26762320 - 26762204
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    |||||||||||||||||||||| |||   ||| |||| ||||| |||||||| ||||||| ||| |||||||||||||||||   ||| | || ||||||    
T  26762320 atttaagtaaagtggggtacccttga---ctacaatggtagccagacaagttggcagctttggtcagagccatcttccattgctccaacctctgcatgtt 26762224  T
Q  318 ttcctcgttattttggaact 337  Q
    ||||| ||||||||||||||    
T  26762223 ttccttgttattttggaact 26762204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 28781477 - 28781398
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcct 322  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| | ||||||||| ||||    
T  28781477 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatcct 28781398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 28786616 - 28786537
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcct 322  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| | ||||||||| ||||    
T  28786616 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatcct 28786537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 28792737 - 28792658
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcct 322  Q
    ||||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| | ||||||||| ||||    
T  28792737 aggactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgttatcct 28792658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 297
Target Start/End: Complemental strand, 27679309 - 27679230
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccat 297  Q
    ||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||| | ||||||    
T  27679309 atttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcctttttccat 27679230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 27677438 - 27677508
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcc 288  Q
    ||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||||    
T  27677438 atttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcc 27677508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 27706226 - 27706296
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcc 288  Q
    ||||||||||||| ||||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||||    
T  27706226 atttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcc 27706296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 26617952 - 26617867
Alignment:
Q  251 aatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaac 336  Q
    |||||||||| || ||||||  ||||||| ||||||| ||||||||||   |||| |||||||||||||||| |||||||||||||    
T  26617952 aatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaac 26617867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 26723880 - 26723795
Alignment:
Q  251 aatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaac 336  Q
    |||||||||| || ||||||  ||||||| ||||||| ||||||||||   |||| |||||||||||||||| |||||||||||||    
T  26723880 aatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgttttccttgttattttggaac 26723795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 27592844 - 27592901
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagc 275  Q
    ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||    
T  27592844 atttaagtaaagttgggtacccaggaggactatcatggtagccggacaagttagcagc 27592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 26802805 - 26802734
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcca 289  Q
    ||||||||||||| ||||||| | ||||||||| ||| |||||||||||||||||||| ||| | |||||||    
T  26802805 atttaagtaaagttgggtaccgaggaggactatcatggtagccggacaagttagcagcctggctcagagcca 26802734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 27337728 - 27337778
Alignment:
Q  45 aaaatcacatccatgtattgagaatatattatgcaattctaacttttttga 95  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  27337728 aaaatcacatccatgtattgacaatatattatacaattctaactgttttga 27337778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 27398468 - 27398518
Alignment:
Q  45 aaaatcacatccatgtattgagaatatattatgcaattctaacttttttga 95  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  27398468 aaaatcacatccatgtattgacaatatattatacaattctaactgttttga 27398518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 26824176 - 26824091
Alignment:
Q  245 gactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattt 330  Q
    ||||| ||||| |||| ||||||| |||||||||  | |||||| ||||||||||| |||||  |||||||||||||| |||||||    
T  26824176 gactaaaatgaaagccagacaagtcagcagcttgtttcagagccttcttccattgaagcaatttctccatgttttccttgttattt 26824091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 27427263 - 27427335
Alignment:
Q  47 aatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttt 119  Q
    ||||||||||||||| | | |||||||||| || || ||||| ||||||||||||||||||| ||| ||||||    
T  27427263 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgttt 27427335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 27604348 - 27604427
Alignment:
Q  42 atcaaaatcacatccatgtat--tgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttt 119  Q
    |||| |||||||||||||||   | |||||||||||| || |||||||| ||||||||||||||||||| | ||||||||    
T  27604348 atcataatcacatccatgtacactcagaatatattatacatttctaactattttgacatataaataactaatacttgttt 27604427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 26848976 - 26848909
Alignment:
Q  265 aagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttg 332  Q
    ||||||||||| ||| |||||||  ||||||||| |||||| ||||||||| |||||| |||||||||    
T  26848976 aagttagcagcatggttaagagctttcttccatttacgcaaacgctccatgctttccttgttattttg 26848909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 27592665 - 27592731
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataact 108  Q
    |||| ||||||||||||||| | ||||| |||||| || |||||||| ||| |||||||||||||||    
T  27592665 atcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27592731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 27679488 - 27679422
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataact 108  Q
    |||| ||||||||||||||| | ||||| |||||| || |||||||| ||| |||||||||||||||    
T  27679488 atcacaatcacatccatgtactaagaatgtattatacatttctaactatttcgacatataaataact 27679422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 27698318 - 27698388
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcc 288  Q
    ||||||||||||| |||||||   ||||||||| ||| |||||||||||||||||||| ||| | ||||||    
T  27698318 atttaagtaaagttgggtacctgggaggactatcatggtagccggacaagttagcagcctggctcagagcc 27698388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 26802981 - 26802904
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttt 119  Q
    |||| ||||||||||||||| | | |||||||||| || |||||||| |||  |||||||||||||| | ||||||||    
T  26802981 atcacaatcacatccatgtactcataatatattatacatttctaactatttcaacatataaataactaatacttgttt 26802904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 336
Target Start/End: Complemental strand, 26811839 - 26811754
Alignment:
Q  251 aatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaac 336  Q
    ||||| |||| || |||||| || ||||| ||||||| ||||||||||   |||| || ||||||||||||| |||||||||||||    
T  26811839 aatgaaagccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgttttccttgttattttggaac 26811754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 26959482 - 26959409
Alignment:
Q  265 aagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaactg 338  Q
    ||||||||||||||| |||||||  |||||||||   |||| |||||||||||||||| | ||||||| |||||    
T  26959482 aagttagcagcttggttaagagctttcttccatttcagcaaccgctccatgttttccttgctattttgaaactg 26959409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 27215012 - 27214911
Alignment:
Q  18 agataagttagaacatacactaaaatcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgt 117  Q
    |||||||||||  ||||||| || ||||| |||| ||||||||| ||||| | ||||||  |||||||||  |||| |||||||||  ||||| ||||||    
T  27215012 agataagttagtgcatacaccaacatcaatatcagatccatgtactgagattgtattatataattctaacccttttcacatataaaacacttatacttgt 27214913  T
Q  118 tt 119  Q
    ||    
T  27214912 tt 27214911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 27706053 - 27706114
Alignment:
Q  47 aatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataact 108  Q
    ||||||||||||||| | ||||| |||||| || |||||||| ||| |||||||||||||||    
T  27706053 aatcacatccatgtactaagaatgtattattcatttctaactatttcgacatataaataact 27706114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 289
Target Start/End: Original strand, 27718218 - 27718274
Alignment:
Q  233 ggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcca 289  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||||    
T  27718218 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcca 27718274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 28098221 - 28098261
Alignment:
Q  258 gccggacaagttagcagcttgggtaagagccatcttccatt 298  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  28098221 gccggacaagttagctgcttggttaagagccatcttccatt 28098261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 28781639 - 28781575
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataa 106  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| |||||||||| ||||||    
T  28781639 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataa 28781575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 28786776 - 28786712
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataa 106  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| |||||||||| ||||||    
T  28786776 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataa 28786712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 28792897 - 28792833
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataa 106  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| |||||||||| ||||||    
T  28792897 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacataaaaataa 28792833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 253
Target Start/End: Complemental strand, 25511303 - 25511268
Alignment:
Q  218 atttaagtaaagtggggtacccatgaggactataat 253  Q
    ||||||||||||| ||||||||||||||||||||||    
T  25511303 atttaagtaaagtagggtacccatgaggactataat 25511268  T

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Target: chr6; HSP #54
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 26636006 - 26635931
Alignment:
Q  265 aagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaactgat 340  Q
    ||||||||||||||| |||||||  |||||||||   |||| | |||||||||||||| | ||||||| |||||||    
T  26636006 aagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgat 26635931  T

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Target: chr6; HSP #55
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 26741972 - 26741897
Alignment:
Q  265 aagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaactgat 340  Q
    ||||||||||||||| |||||||  |||||||||   |||| | |||||||||||||| | ||||||| |||||||    
T  26741972 aagttagcagcttggttaagagctttcttccatttcagcaaccactccatgttttccttgctattttgaaactgat 26741897  T

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Target: chr6; HSP #56
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 27698230 - 27698296
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataact 108  Q
    |||| ||||||||| ||||| | ||||||||||||  | |||||||| ||| |||||||||||||||    
T  27698230 atcacaatcacatctatgtactcagaatatattataaatttctaactatttcgacatataaataact 27698296  T

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Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 28234864 - 28234807
Alignment:
Q  280 gtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaact 337  Q
    |||||||||||||||||||   |||| | ||||||||| |||| ||||||||||||||    
T  28234864 gtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaact 28234807  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 28127516 - 28127608
Alignment:
Q  244 ggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaac 336  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||| || |||||||||||||    
T  28127516 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaac 28127608  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 28164200 - 28164292
Alignment:
Q  244 ggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaac 336  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||| || |||||||||||||    
T  28164200 ggactataatggtagccggacaagttagcagcttgggttagagctatcttccattggtgcaatcgctccatgtttttcttgttattttggaac 28164292  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 268195 - 268285
Alignment:
Q  245 gactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaa 335  Q
    ||||| |||| ||||| |||||||||| ||||||||| ||||||| |||||||||| |||| ||||||||||||| || | ||||||||||    
T  268195 gactagaatggtagccagacaagttagaagcttgggtcagagccaacttccattgatgcaaccgctccatgtttttcttgctattttggaa 268285  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 18723901 - 18724013
Alignment:
Q  220 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| ||| ||||||| |||||||||| |||| |||||||||||||    
T  18723901 ttaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18723997  T
Q  320 cctcgttattttggaa 335  Q
     || ||||||||||||    
T  18723998 tcttgttattttggaa 18724013  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 18731320 - 18731432
Alignment:
Q  220 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||||| || ||||||||||   ||| |||| |||||||||||||||||||||| ||| ||||||| |||||||||| |||| |||||||||||||    
T  18731320 ttaagtaaagaggagtacccatga---ctaaaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttt 18731416  T
Q  320 cctcgttattttggaa 335  Q
     || ||||||||||||    
T  18731417 tcttgttattttggaa 18731432  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 18655313 - 18655405
Alignment:
Q  243 aggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaa 335  Q
    ||||||| |||| |||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||||||||||| || ||||||||||||    
T  18655313 aggactagaatggtagccggacaagttagcagcttcggtcagagccaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18655405  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 18679383 - 18679495
Alignment:
Q  220 ttaagtaaagtggggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||||| || |||||||   |||||| |||| |||||||||||||||||||||| ||| ||||| | |||||||||| |||| |||||||||||||    
T  18679383 ttaagtaaagaggagtaccca---ggactaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttt 18679479  T
Q  320 cctcgttattttggaa 335  Q
      | ||||||||||||    
T  18679480 tattgttattttggaa 18679495  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 18699239 - 18699328
Alignment:
Q  246 actataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaa 335  Q
    |||| |||| |||||||||||||||||||||| ||| ||||| | |||||||||| |||| ||||||||||||| || ||||||||||||    
T  18699239 actaaaatggtagccggacaagttagcagcttcggtcagagctaacttccattgatgcaaccgctccatgtttttcttgttattttggaa 18699328  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 18074292 - 18074220
Alignment:
Q  47 aatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttt 119  Q
    ||||||||||||||| | | |||||||||| || || ||||| ||||||||||||||||||| ||| ||||||    
T  18074292 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgttt 18074220  T

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Target: scaffold0419 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 7861 - 7789
Alignment:
Q  245 gactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  7861 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgtt 7789  T

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Target: scaffold0419; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Complemental strand, 8025 - 7968
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacata 99  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| ||||||||||    
T  8025 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacata 7968  T

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Target: scaffold0277 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 13483 - 13555
Alignment:
Q  245 gactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  13483 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaatcgctccatgtt 13555  T

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Target: scaffold0277; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 4522 - 4594
Alignment:
Q  245 gactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtt 317  Q
    ||||| |||| |||||||||||||||||||||||||| ||||||| |||||||||| |||| | |||||||||    
T  4522 gactagaatggtagccggacaagttagcagcttgggtcagagccaacttccattgatgcaacctctccatgtt 4594  T

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Target: scaffold0277; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 13319 - 13376
Alignment:
Q  42 atcaaaatcacatccatgtattgagaatatattatgcaattctaacttttttgacata 99  Q
    |||| ||||||||||||||| | |||||||| ||| || |||||||| ||||||||||    
T  13319 atcacaatcacatccatgtactcagaatatagtatacatttctaactattttgacata 13376  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 119
Target Start/End: Complemental strand, 60100 - 60028
Alignment:
Q  47 aatcacatccatgtattgagaatatattatgcaattctaacttttttgacatataaataacttacacttgttt 119  Q
    ||||||||||||||| | | |||||||||| || || ||||| ||||||||||||||||||| ||| ||||||    
T  60100 aatcacatccatgtactcataatatattatacatttttaactattttgacatataaataactaacaattgttt 60028  T

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Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 3259 - 3345
Alignment:
Q  233 ggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagccatcttccattgacgcaatcgctccatgtttt 319  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| ||| | |||||||  |||||| |  |||| | |||||||||||    
T  3259 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagccactttccatcgctgcaacctctccatgtttt 3345  T

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Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 14195 - 14250
Alignment:
Q  233 ggtacccatgaggactataatgatagccggacaagttagcagcttgggtaagagcc 288  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| ||| | ||||||    
T  14195 ggtacccaggaggactatcatggtagccggacaagttagcagcctggctcagagcc 14250  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 3280026 - 3279986
Alignment:
Q  258 gccggacaagttagcagcttgggtaagagccatcttccatt 298  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  3280026 gccggacaagttagctgcttggttaagagccatcttccatt 3279986  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 35026 - 34969
Alignment:
Q  280 gtaagagccatcttccattgacgcaatcgctccatgttttcctcgttattttggaact 337  Q
    |||||||||||||||||||   |||| | ||||||||| |||| ||||||||||||||    
T  35026 gtaagagccatcttccatttctgcaacctctccatgttatccttgttattttggaact 34969  T

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