View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_21 (Length: 352)
Name: NF13108_low_21
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 30656258 - 30656578
Alignment:
| Q |
13 |
atactcgagtactgaatagaggaaaacactgcatctagaacttgaagaagcacatggttcaatggaatgccctagctaaataattgtttacnnnnnnnnn |
112 |
Q |
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| T |
30656258 |
atactcgagtactgaatagaggaaaacactgcatctagaacttgaagaagcacatggttcaatggaatgccctagctaaataattgtttacaaaaattac |
30656357 |
T |
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| Q |
113 |
nnnnnnnnnnngatacgaattacttcagtagaagttgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctct |
212 |
Q |
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| T |
30656358 |
aaaaaacaaaagatacgaataacttcagtagaagttgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctct |
30656457 |
T |
|
| Q |
213 |
aacaccaatacacttgatccttctgattcatcttgtttccctgct---ttattctttacaccttttgataacatctttctttgttcatagtgcctttctt |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
30656458 |
aacaccaaaacacttgatccttctgattcatcttgtctccctgctttattattctttacaccttttgataacaactttctttgttcatagtgcctctctt |
30656557 |
T |
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| Q |
310 |
ttagtgcaagtgcaggtgaag |
330 |
Q |
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| T |
30656558 |
ttagtgcaagtgcaggtgaag |
30656578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 148 - 330
Target Start/End: Original strand, 30689452 - 30689634
Alignment:
| Q |
148 |
tgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaatacacttgatccttctgattcatcttg |
247 |
Q |
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| T |
30689452 |
tgcttgtactttgattatcagatatggatagaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccttctgattcatcttg |
30689551 |
T |
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| Q |
248 |
tttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaag |
330 |
Q |
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| T |
30689552 |
tttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaag |
30689634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 148 - 330
Target Start/End: Original strand, 30698335 - 30698520
Alignment:
| Q |
148 |
tgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaatacacttgatccttctgattcatcttg |
247 |
Q |
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| T |
30698335 |
tgcttgaactttgattatcagatattgttagaagttgctcgagatattcaactcccaaatcctctaacaccaaaacacttgatccctctgattcatcttg |
30698434 |
T |
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| Q |
248 |
tttccctgct---ttattctttacaccttttgataacatctttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaag |
330 |
Q |
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| T |
30698435 |
tttccctgctttattattctttgtagcttttgataacatttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaag |
30698520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 148 - 330
Target Start/End: Original strand, 30671554 - 30671739
Alignment:
| Q |
148 |
tgcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaatacacttgatccttctgattcatcttg |
247 |
Q |
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| T |
30671554 |
tgcttgtactttgatgatctgacatagttaaaagttgctcaagatattcaactcccaaatcctctaacaccaaaacacttgatccctctgattgatcttg |
30671653 |
T |
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| Q |
248 |
tttccctgct---ttattctttacaccttttgataacatctttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaag |
330 |
Q |
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| T |
30671654 |
tttccctgctttattattctttgtagcttttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaag |
30671739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 30710210 - 30710291
Alignment:
| Q |
149 |
gcttgtagtttgattatcagatatggttagaagttgctcaagatattcaactcccaaatcctctaacaccaatacacttgat |
230 |
Q |
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| T |
30710210 |
gcttgtactttgattatctgacatacttagaagttgctcaagatattcaactcccaaatcctctaacaccaacacacttgat |
30710291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 275 - 330
Target Start/End: Original strand, 30718622 - 30718677
Alignment:
| Q |
275 |
tgataacatctttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaag |
330 |
Q |
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| T |
30718622 |
tgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaag |
30718677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 56539407 - 56539355
Alignment:
| Q |
249 |
ttccctgctttattctttacaccttttgataacatctttctttgttcatagtg |
301 |
Q |
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|||||||||||| | ||||||||||| ||||||||||||||||||||| |||| |
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| T |
56539407 |
ttccctgctttactatttacacctttggataacatctttctttgttcacagtg |
56539355 |
T |
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