View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_22 (Length: 351)
Name: NF13108_low_22
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 43339112 - 43338971
Alignment:
| Q |
23 |
tcgctaccatcaattttcgcaaactgtacacaaatctctttttagtgtacttgagaatcctccaagtgaatagtgtccaattgtgaggtgagttagaggc |
122 |
Q |
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| T |
43339112 |
tcgctaccatgaattttcgcaaactgtacacaaatctctttttagtgtacttgagaatcctccaagtgaatagtgtccaattgtgaggtgagttagaggc |
43339013 |
T |
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| Q |
123 |
caaatatggacgatctcatggacttatctcaaaacccaacaa |
164 |
Q |
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| T |
43339012 |
caaatatggacgatctcatggacttatctcaaaacccaacaa |
43338971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 207 - 340
Target Start/End: Complemental strand, 43338490 - 43338357
Alignment:
| Q |
207 |
ctattagctaccatttttcacagaaccaattttaattgcttgtaaatacactataaatgaataacaaattagtcaaatttctgagctagttagttcaatg |
306 |
Q |
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| T |
43338490 |
ctattagctaccatttttcacagaaccaattttaattgcttgtaaatacactataaatgaataacaaattagtcaaatttctgagctagttagttcaatg |
43338391 |
T |
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| Q |
307 |
aaatagatagcgatgccaaatatatccaaggaga |
340 |
Q |
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| T |
43338390 |
aaatagatagcgatgccaaatatatccaaggaga |
43338357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 43338623 - 43338569
Alignment:
| Q |
159 |
caacaacttcaatgttcattataacgcctaacaaaataaaagtttcctctattag |
213 |
Q |
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| T |
43338623 |
caacaacttcaatgttcattataacgcctaacaaaataaaagtttcctctattag |
43338569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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