View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_24 (Length: 324)
Name: NF13108_low_24
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 51407015 - 51407253
Alignment:
| Q |
1 |
ctagatgcgaaagcaatcaatcaatcttacgaaagaattaatgttccagtaaggtaaaactgttctgtaaataagcaataattctaactaacaaataaaa |
100 |
Q |
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| T |
51407015 |
ctagatgcgaaagtaatcaatcaatcttacgaaagaattaatgttccagtaaggtaaaactgttctgtaaataagcaataattctaactaacaaataaaa |
51407114 |
T |
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| Q |
101 |
tgaaaataacatagcaattggttaagctgtaaattaacaataatccacaaagacaccaaaaatcaaaagaaccataaaattagcatattgaggttgcagc |
200 |
Q |
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| T |
51407115 |
tgaaaataacagagcaattggttaagctgtaaattaacaataatccacaaagacaccaaaaatcaaaagaaccataaaattagcatattgaggttgcagc |
51407214 |
T |
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| Q |
201 |
tacaacctaactataaagtcactggtcaccaaaacaggg |
239 |
Q |
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| T |
51407215 |
tacaacctaactataaagtcactggtcaccaaaacaggg |
51407253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 313
Target Start/End: Original strand, 51407292 - 51407333
Alignment:
| Q |
272 |
taacatataggttgcagctgatcgtctctagttcatctcact |
313 |
Q |
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| T |
51407292 |
taacatataggttggagctgatcgtctctagttcatgtcact |
51407333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 51756353 - 51756388
Alignment:
| Q |
83 |
tctaactaacaaataaaatgaaaataacatagcaatt |
119 |
Q |
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| T |
51756353 |
tctaactaacaaataaa-tgaaaataacatagcaatt |
51756388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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