View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_25 (Length: 282)

Name: NF13108_low_25
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_25
NF13108_low_25
[»] chr6 (19 HSPs)
chr6 (13-266)||(9411230-9411483)
chr6 (122-231)||(6423201-6423310)
chr6 (128-249)||(6432151-6432272)
chr6 (75-231)||(6603208-6603364)
chr6 (128-249)||(6409996-6410117)
chr6 (126-231)||(11936281-11936386)
chr6 (126-231)||(11948261-11948366)
chr6 (75-230)||(6415903-6416058)
chr6 (130-240)||(6394856-6394966)
chr6 (122-231)||(7994188-7994297)
chr6 (187-240)||(12102315-12102368)
chr6 (145-231)||(6596934-6597020)
chr6 (133-231)||(14802331-14802429)
chr6 (128-221)||(10579752-10579845)
chr6 (144-231)||(6586116-6586203)
chr6 (128-177)||(6402850-6402899)
chr6 (75-212)||(6585262-6585399)
chr6 (187-231)||(6589329-6589373)
chr6 (186-238)||(9410750-9410802)
[»] chr1 (5 HSPs)
chr1 (42-204)||(7554392-7554554)
chr1 (131-228)||(9586632-9586729)
chr1 (133-231)||(19468505-19468603)
chr1 (133-228)||(9581064-9581161)
chr1 (133-215)||(43634902-43634984)
[»] chr2 (2 HSPs)
chr2 (43-231)||(45245091-45245279)
chr2 (125-210)||(1037691-1037776)
[»] chr3 (5 HSPs)
chr3 (75-221)||(13470748-13470894)
chr3 (75-231)||(51113787-51113943)
chr3 (77-231)||(51764446-51764600)
chr3 (130-240)||(51120890-51121000)
chr3 (187-231)||(1657300-1657344)
[»] chr4 (20 HSPs)
chr4 (43-231)||(1552773-1552964)
chr4 (124-240)||(1524483-1524599)
chr4 (131-231)||(1548430-1548530)
chr4 (122-238)||(570335-570451)
chr4 (43-231)||(1489367-1489555)
chr4 (131-210)||(55505135-55505214)
chr4 (75-212)||(640852-640989)
chr4 (125-210)||(55908755-55908840)
chr4 (75-159)||(1517574-1517658)
chr4 (128-231)||(1513413-1513516)
chr4 (76-231)||(8187097-8187252)
chr4 (187-231)||(532238-532282)
chr4 (75-159)||(1495997-1496081)
chr4 (75-231)||(12121463-12121619)
chr4 (121-240)||(1537764-1537883)
chr4 (121-231)||(546896-547006)
chr4 (187-231)||(1519148-1519192)
chr4 (187-231)||(1600468-1600512)
chr4 (121-173)||(3438629-3438681)
chr4 (193-233)||(21834382-21834422)
[»] chr8 (7 HSPs)
chr8 (124-231)||(18315279-18315386)
chr8 (124-231)||(32151287-32151394)
chr8 (185-231)||(21235605-21235651)
chr8 (130-231)||(17636407-17636508)
chr8 (133-231)||(27922503-27922601)
chr8 (122-210)||(34936190-34936278)
chr8 (187-231)||(28246301-28246345)
[»] chr5 (3 HSPs)
chr5 (75-230)||(41901542-41901697)
chr5 (77-233)||(38267560-38267716)
chr5 (130-221)||(20478098-20478189)
[»] chr7 (1 HSPs)
chr7 (122-240)||(15092148-15092266)
[»] scaffold0295 (1 HSPs)
scaffold0295 (121-210)||(651-740)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 9411230 - 9411483
Alignment:
Q  13 aatattagcatgcactcgatgacaaagccgcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatga 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411230 aatattagcatgcactcgatgacaacgccgcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatga 9411329  T
Q  113 cagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctcca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9411330 cagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctcca 9411429  T
Q  213 gcttgggaagttcaaagttgaatccatggagcgtcacacaagtacaagataggt 266  Q
    |||||||||  |||||||| ||||||| |||||||||||||||||||| |||||    
T  9411430 gcttgggaacctcaaagttcaatccatcgagcgtcacacaagtacaagctaggt 9411483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 6423201 - 6423310
Alignment:
Q  122 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    ||||| ||||||||||  |||| |||| ||||||||||| |||||||| ||| ||||  ||| | ||||| |||||||||||||||||||||||||||||    
T  6423201 agtaatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaa 6423300  T
Q  222 gttcaaagtt 231  Q
     || ||||||    
T  6423301 cttaaaagtt 6423310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 6432151 - 6432272
Alignment:
Q  128 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaa 227  Q
    ||||||| ||| |||| |||||||||| ||||| |||| ||| |||||||   ||| | ||||| ||||||||||||||||| ||||||||||| |||||    
T  6432151 agttgcagaagcccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaa 6432250  T
Q  228 agttgaatccatggagcgtcac 249  Q
    |||| | |||||| ||| ||||    
T  6432251 agttcattccatgtagcttcac 6432272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 6603364 - 6603208
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||  ||||||| || ||| |||||| || |||  ||| || ||| |||| |||||| ||| ||||| ||||||||||| |||||| | ||||    
T  6603364 ctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcatagactgtttc 6603265  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||   ||||||||||| || ||||| ||||||||  |||||||||||| |||||||    
T  6603264 atcatcaacacctgtatctgccaagtccaacacctgtagcttgggaagtacaaagtt 6603208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 6409996 - 6410117
Alignment:
Q  128 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaa 227  Q
    ||||||||||| | || |||||||||||||||| |||| ||  |||||||   ||| | ||||| |||| |||||||||||| ||||||||||| |||||    
T  6409996 agttgcaaaagccgacaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaa 6410095  T
Q  228 agttgaatccatggagcgtcac 249  Q
    |||| | |||||| ||| ||||    
T  6410096 agttcattccatgtagcttcac 6410117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 11936386 - 11936281
Alignment:
Q  126 acagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttc 225  Q
    ||||||||||||| |||| |||| |||||||||||  |||||||  || ||||  ||| | |||| ||||||||| |||||||||||| ||||||| |||    
T  11936386 acagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 11936287  T
Q  226 aaagtt 231  Q
    ||||||    
T  11936286 aaagtt 11936281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 231
Target Start/End: Complemental strand, 11948366 - 11948261
Alignment:
Q  126 acagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttc 225  Q
    ||||||||||||| |||| |||| |||||||||||  |||||||  || ||||  ||| | |||| ||||||||| |||||||||||| ||||||| |||    
T  11948366 acagttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 11948267  T
Q  226 aaagtt 231  Q
    ||||||    
T  11948266 aaagtt 11948261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 230
Target Start/End: Original strand, 6415903 - 6416058
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||  ||||||||   ||| ||||||||| |||  |||  ||||| ||||||||||| || | |||||||||||||||| |||||||  |||     
T  6415903 ctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcacatagagagtttt 6416002  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagt 230  Q
    |||   |||   ||||| ||||||||||||||||||||| ||||||| | ||||||    
T  6416003 atcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 6416058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 6394856 - 6394966
Alignment:
Q  130 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaag 229  Q
    ||||||||| |||| |||||||||||||||| || | ||  |||||||   ||| | ||||| ||||||||||||||||||||||| ||||| | |||||    
T  6394856 ttgcaaaagcccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaag 6394955  T
Q  230 ttgaatccatg 240  Q
    || | ||||||    
T  6394956 ttcattccatg 6394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 7994297 - 7994188
Alignment:
Q  122 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    ||||| |||||||||||||||  |||||||||||||||| |||| ||| |||| ||   ||| | ||||| ||||| |||||||||||| ||||| ||||    
T  7994297 agtaatagttgcaaaagtccagaacaattctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaa 7994198  T
Q  222 gttcaaagtt 231  Q
     | |||||||    
T  7994197 ctacaaagtt 7994188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 12102315 - 12102368
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagttgaatccatg 240  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  12102315 tgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatg 12102368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 6597020 - 6596934
Alignment:
Q  145 acaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||||||||||||||  | |||||| |||||||   ||||  ||||  ||||||||||||||||||||||| ||||| |||||||||    
T  6597020 acaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctccagctggggaatttcaaagtt 6596934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 14802331 - 14802429
Alignment:
Q  133 caaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||||| |||| |||||||||||| ||| |||||||| |||||||   |||   ||||| |||||| |||||||| |||| |||||||| |||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 10579845 - 10579752
Alignment:
Q  128 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    |||| |||||| | || ||||||||||||||||  ||||||| ||| |||   |||   ||||||||||||||||||||||||||||| |||||    
T  10579845 agttccaaaagccgacaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccagctggggaa 10579752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 6586203 - 6586116
Alignment:
Q  144 gacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||| ||||||||||| || ||||| |||||||   |||| |||| | |||||| | ||||||||| |||||||||||| |||||||    
T  6586203 gacaaatctttgagatcgcacagagtgtttcatcatgaacatctgtttttgacaaatccaacacctctagcttgggaagtacaaagtt 6586116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 6402850 - 6402899
Alignment:
Q  128 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatc 177  Q
    |||| |||||| |||| |||||||||||||||| |||||||| |||||||    
T  6402850 agtttcaaaagcccactacaattctttgagatcacatagagtgtttcatc 6402899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 212
Target Start/End: Complemental strand, 6585399 - 6585262
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||  ||| |||||| ||| ||||||| | ||| | || |||||| |||| ||||||  ||  |||| ||||||||||| |||||||| ||||    
T  6585399 ctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgtttc 6585300  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctcca 212  Q
    |||   |||   ||||| |||||||||||| |||||||    
T  6585299 atcatcaacctttgtatctgacaagttcaatacctcca 6585262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 6589373 - 6589329
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||| |||||||||||||||||||||| |||||| | |||||||    
T  6589373 tgtatttgacaagttcaacacctccagcatgggaactacaaagtt 6589329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 9410750 - 9410802
Alignment:
Q  186 ctgtatatgacaagttcaacacctccagcttgggaagttcaaagttgaatcca 238  Q
    |||||| |||||| ||||||||||||| |||||||  ||||||||| ||||||    
T  9410750 ctgtatgtgacaaattcaacacctccaacttgggagcttcaaagttcaatcca 9410802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 204
Target Start/End: Original strand, 7554392 - 7554554
Alignment:
Q  42 gcaaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcc 141  Q
    ||||||| |||||||||||| ||  ||| ||| ||||||||||| |||||||||| ||| ||||||||| ||| | || |||||||||||| ||||||||    
T  7554392 gcaaattaatctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtcc 7554491  T
Q  142 acgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaa 204  Q
    || |||| |||||||||||  |||||||  ||||||   ||||| ||||||||| ||||||||    
T  7554492 accacaactctttgagatcatatagagtgcttcatcatcaacacttgtatatgataagttcaa 7554554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 131 - 228
Target Start/End: Original strand, 9586632 - 9586729
Alignment:
Q  131 tgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaa 228  Q
    ||||||||||||||||||||| ||||| || |||| ||| |||||||   |||| ||||||||||||||||||||||||| |||||||| | ||||||    
T  9586632 tgcaaaagtccacgacaattcattgaggtcacataaagtgtttcatcattaacatctgtatatgacaagttcaacacctctagcttggggacttcaaa 9586729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 19468603 - 19468505
Alignment:
Q  133 caaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||||||||| ||| |||||||||||| |||| ||| |||||||   |||   ||||| |||||| |||||||||||||||||||||| | |||||||    
T  19468603 caaaagtccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagtt 19468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 228
Target Start/End: Original strand, 9581064 - 9581161
Alignment:
Q  133 caaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacct--gtatatgacaagttcaacacctccagcttgggaagttcaaa 228  Q
    |||||||||||||||||||||||||||| |||| ||  |||||||   |||   |  ||| ||||||||||||||||||| |||||||| ||||||||    
T  9581064 caaaagtccacgacaattctttgagatcacataaagcgtttcatcattaacttttttgtacatgacaagttcaacacctctagcttggggagttcaaa 9581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 43634902 - 43634984
Alignment:
Q  133 caaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagct 215  Q
    ||||||||||||||||||||||||| || |||| ||| || |||||  |||   ||||||||||||||||||| |||| ||||    
T  43634902 caaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacgcctctagct 43634984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 45245279 - 45245091
Alignment:
Q  43 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcca 142  Q
    ||||||||||||| | |||||   ||||||| ||||||||||  |||||||||||||| |||||| || |||   || || ||| ||||||||||| |||    
T  45245279 caaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagccca 45245180  T
Q  143 cgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||||| ||||||||||| ||| |||| |||||||   |||   ||| | |||||| ||||||||||| || || |||| |||||||||    
T  45245179 cgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 1037776 - 1037691
Alignment:
Q  125 aacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctc 210  Q
    |||||||| ||||| |||| ||||||||||||||||  ||||||| |||||||   ||||| ||||| ||||||||| ||||||||    
T  1037776 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 1037691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 13470894 - 13470748
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||  |||||||||  ||| |||||||||||||   ||  ||||| ||||||||||| |||| ||||||||||||||||  ||||||| |||     
T  13470894 ctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcatatagagtgtttt 13470795  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    |||   |||   ||||| ||||||||||||||||||||| |||||||    
T  13470794 atcattaacctttgtatttgacaagttcaacacctccagattgggaa 13470748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 51113943 - 51113787
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||| |||||||||| ||| ||||||  | |||   || |||||||||||||||||| |||| |||| |||| |||||| |||||||| ||||    
T  51113943 ctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttc 51113844  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||   |||   ||||| ||||||||  ||||||||||| ||||||  |||||||||    
T  51113843 atcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagtt 51113787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 231
Target Start/End: Complemental strand, 51764600 - 51764446
Alignment:
Q  77 accacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcat 176  Q
    ||||||||  |||||||||| ||  ||||||||| |||   || |||||| ||||||||||| || | |||||||||||||||| |||||||| ||| ||    
T  51764600 accacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgcatagagtgttttat 51764501  T
Q  177 cgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |   |||   |||| |||||||||  |||||||||||||| |||| | |||||||    
T  51764500 catcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagtt 51764446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 51121000 - 51120890
Alignment:
Q  130 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaag 229  Q
    ||||||||| ||||||||| ||||||||||  |||| ||| |||||||   ||| | |||||  |||||||||||||||||||  ||| ||| |||||||    
T  51121000 ttgcaaaagcccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaag 51120901  T
Q  230 ttgaatccatg 240  Q
    || | ||||||    
T  51120900 ttcattccatg 51120890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 1657300 - 1657344
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||| ||||||||| |||||||||||| ||||||| |||||||||    
T  1657300 tgtaaatgacaagtccaacacctccagtttgggaacttcaaagtt 1657344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 1552964 - 1552773
Alignment:
Q  43 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgc---agtaacagttgcaaaagt 139  Q
    ||||||||||||| | ||||||| ||||||| || | |||||| |||||||||| ||  |||||| || |   |||||    |||||||| ||||||||     
T  1552964 caaattgatctctcttagttgcaagcaattttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaaagc 1552865  T
Q  140 ccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||||||||||||||| ||| ||| |||| |||||||   || |  ||||| |||||| |||||||| ||||| ||||||| |||||||||    
T  1552864 ccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagtt 1552773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 1524599 - 1524483
Alignment:
Q  124 taacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagt 223  Q
    ||||||||||||||| ||||||||| ||| |||||||  ||||||| |||||||   ||||| ||||  |||||| |||||||||||||  ||||||| |    
T  1524599 taacagttgcaaaagcccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaact 1524500  T
Q  224 tcaaagttgaatccatg 240  Q
    |||||||| | ||||||    
T  1524499 tcaaagttcattccatg 1524483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 1548530 - 1548430
Alignment:
Q  131 tgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagt 230  Q
    |||||||| |||| |||| ||||||||||| ||| |||| |||||||   || || ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  231 t 231  Q
    |    
T  1548430 t 1548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 238
Target Start/End: Original strand, 570335 - 570451
Alignment:
Q  122 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    ||||||||||||||||| || |||||| ||||||| |||  |||||||  ||| |    ||| |||||||||||||||||||||||||| || ||| |||    
T  570335 agtaacagttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaa 570434  T
Q  222 gttcaaagttgaatcca 238  Q
     ||||||||| ||||||    
T  570435 cttcaaagttcaatcca 570451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 231
Target Start/End: Complemental strand, 1489555 - 1489367
Alignment:
Q  43 caaattgatctctttgagttgcaggcaatttcctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtcca 142  Q
    ||||||||||||| | |||||   ||| ||| ||| ||||||| |||||||||| ||| ||||||||  ||| | || |||||| ||||||||||| |||    
T  1489555 caaattgatctctcttagttgtgcgcatttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagccca 1489456  T
Q  143 cgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    || |||  | |||||||  || | ||| |||| | |  ||||  ||||||||||||||||||||| || || ||||||| |||||||||    
T  1489455 cggcaacacattgagattacacacagtgtttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagtt 1489367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 55505214 - 55505135
Alignment:
Q  131 tgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctc 210  Q
    ||||||||||||||||||||||||||| || |||| ||| || |||||  |||   ||||||||||||||||||||||||    
T  55505214 tgcaaaagtccacgacaattctttgaggtcacataaagtgttccatcgtcaacctttgtatatgacaagttcaacacctc 55505135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 640852 - 640989
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||  |||||||||| | | | |||| ||||||   || ||||||||| |||||||| ||||| |||||||||||| || | |||||| ||||    
T  640852 ctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgtagagtgtttc 640951  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctcca 212  Q
    |||   |||   ||||| ||||||||||||||||||||    
T  640952 atcatcaacgtttgtatctgacaagttcaacacctcca 640989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 55908840 - 55908755
Alignment:
Q  125 aacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctc 210  Q
    |||||||| ||||| |||| ||||||||||||||||  ||||||| |||||||   ||||| ||||| ||||||||| ||||||||    
T  55908840 aacagttgtaaaagcccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctc 55908755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 1517658 - 1517574
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat 159  Q
    ||||||||||| | |||||||| ||| |||||| ||||||   || |||||| |||| ||||| |||||||||||||||||||||    
T  1517658 ctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagat 1517574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 1513516 - 1513413
Alignment:
Q  128 agttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaa 227  Q
    ||||||||||| |||||||||  |||||||||  | |||||| |||||||   ||||  |||| |||||||||||||||| || || ||||||| |||||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  228 agtt 231  Q
    ||||    
T  1513416 agtt 1513413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 231
Target Start/End: Complemental strand, 8187252 - 8187097
Alignment:
Q  76 taccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttca 175  Q
    |||||||| ||||||||||||  || |||| ||| ||||   || ||||||||  |||||||| |||| |||| ||||||| ||  |||| ||| ||| |    
T  8187252 taccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaattgcataaagtgtttta 8187153  T
Q  176 tcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||   ||| | ||||| ||||||||||||||||||||| |||| || |||||||||    
T  8187152 tcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagtt 8187097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 532238 - 532282
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||||||||||||||||||||||| |||||||| | |||||||||    
T  532238 tgtatatgacaagttcaacacctctagcttggggacttcaaagtt 532282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 1496081 - 1495997
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagat 159  Q
    ||||||||||| | |||||||| ||| ||| || ||||||   || ||||||  ||||||||| |||||||||||||||||||||    
T  1496081 ctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagat 1495997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 231
Target Start/End: Complemental strand, 12121619 - 12121463
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||| |||||||| | ||| |||||  |   || |||| |||| | ||||||||||| ||||| |||  |||||||||  |  ||||| ||||    
T  12121619 ctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacggagagtgtttc 12121520  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||   ||||  ||||||||||||||||||||| || || ||||||| |||||||||    
T  12121519 atcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagtt 12121463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 1537883 - 1537764
Alignment:
Q  121 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttggga 220  Q
    |||||| ||||||||||| |||||||||  |||||||||  || | ||| |||  ||   ||||  ||||||||||||||||||||| || || ||||||    
T  1537883 cagtaaaagttgcaaaagcccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttggga 1537784  T
Q  221 agttcaaagttgaatccatg 240  Q
    | ||||||||| | ||||||    
T  1537783 acttcaaagttcattccatg 1537764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 546896 - 547006
Alignment:
Q  121 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttggga 220  Q
    |||||||| || |||||| |||| |||| ||||||||||| |||||||| |||||||    |||  ||||  ||||||||||| ||||||||  || |||    
T  546896 cagtaacaattccaaaagcccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttagga 546995  T
Q  221 agttcaaagtt 231  Q
    | |||||||||    
T  546996 acttcaaagtt 547006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 1519192 - 1519148
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||| |||||||||||||||||| || ||||||| |||||||||    
T  1519192 tgtatgtgacaagttcaacacctctagtttgggaacttcaaagtt 1519148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 1600468 - 1600512
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||||||||||||||||||||||||| ||  ||| |||||||||    
T  1600468 tgtatatgacaagttcaacacctccagtttaagaacttcaaagtt 1600512  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 3438681 - 3438629
Alignment:
Q  121 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtattt 173  Q
    |||||||||||||||||| |||| |||| ||||||||||  ||| ||||||||    
T  3438681 cagtaacagttgcaaaagcccacaacaactctttgagattacatggagtattt 3438629  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 21834422 - 21834382
Alignment:
Q  193 tgacaagttcaacacctccagcttgggaagttcaaagttga 233  Q
    |||||||| |||||||||||||||||||| | |||||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagttga 21834382  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 18315386 - 18315279
Alignment:
Q  124 taacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagt 223  Q
    ||||||||||||||| | ||||||| ||||||||||| ||||||||  ||||||   |||   ||||| ||||||||||||||||||||| ||||||| |    
T  18315386 taacagttgcaaaagcctacgacaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaact 18315287  T
Q  224 tcaaagtt 231  Q
    | ||||||    
T  18315286 ttaaagtt 18315279  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 231
Target Start/End: Original strand, 32151287 - 32151394
Alignment:
Q  124 taacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagt 223  Q
    ||||||||||||||| |||| |||| ||||||||||| |||||||| |||||||   ||  | |||| |||||||||| ||||||||||| |||| || |    
T  32151287 taacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaact 32151386  T
Q  224 tcaaagtt 231  Q
    || |||||    
T  32151387 tcgaagtt 32151394  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 21235605 - 21235651
Alignment:
Q  185 cctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||    
T  21235605 cctgtatatgacaagttcaacacctccagtttgggaacttcaaagtt 21235651  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 17636508 - 17636407
Alignment:
Q  130 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaag 229  Q
    ||||||||||| | ||||| ||||||||||| |||| | |  |||||||  ||| ||||| | ||||||||||||||||||||  ||||||| |||||||    
T  17636508 ttgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaag 17636409  T
Q  230 tt 231  Q
    ||    
T  17636408 tt 17636407  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 231
Target Start/End: Original strand, 27922503 - 27922601
Alignment:
Q  133 caaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||||| |||| |||| |||||||||||  ||| |||  ||||||   ||||  ||||||||||||||||||||||||||  ||||||| |||||||||    
T  27922503 caaaagcccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagtt 27922601  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 34936278 - 34936190
Alignment:
Q  122 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctc 210  Q
    ||||| ||||||||||| ||||||||| |||||| |||  |||||||| ||| |||   ||| | |||||||||||||| |||||||||    
T  34936278 agtaatagttgcaaaagcccacgacaactctttgcgatggcatagagtgttttatcatcaactcttgtatatgacaagtccaacacctc 34936190  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 28246345 - 28246301
Alignment:
Q  187 tgtatatgacaagttcaacacctccagcttgggaagttcaaagtt 231  Q
    |||| ||||||||| |||||||||||| ||||||| |||||||||    
T  28246345 tgtaaatgacaagtccaacacctccagtttgggaacttcaaagtt 28246301  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 230
Target Start/End: Complemental strand, 41901697 - 41901542
Alignment:
Q  75 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 174  Q
    ||||||||||| |||||||||| | | |||||| || |||   ||| ||| ||| || ||||||||||| |||| |||||||||||  ||| |||  |||    
T  41901697 ctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaagtgcttc 41901598  T
Q  175 atcgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagt 230  Q
    |||   |||   ||||||||||||||||||||||||||| ||||||| ||||||||    
T  41901597 atcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 233
Target Start/End: Complemental strand, 38267716 - 38267560
Alignment:
Q  77 accacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcat 176  Q
    |||||||||||||||||||| ||  |||||||   |||   ||||||  |||||| |||||| ||||| ||  ||||||||||  |||||||| | ||||    
T  38267716 accacatgcatcactcccttctcggtgacattcgtacaaagttgcagcgacagtttcaaaagcccacggcacgtctttgagattacatagagtgtgtcat 38267617  T
Q  177 cgaaaacacctgtatatgacaagttcaacacctccagcttgggaagttcaaagttga 233  Q
    |   ||| | ||||| || ||||| ||||||||| || ||||||| |||||||||||    
T  38267616 catcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagttga 38267560  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 20478189 - 20478098
Alignment:
Q  130 ttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    ||||||||| |||| ||||||| |||||||| || | | | |||| ||   ||||  ||||||||||||||||||||||||||||| |||||    
T  20478189 ttgcaaaagcccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctccagctggggaa 20478098  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 15092266 - 15092148
Alignment:
Q  122 agtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctccagcttgggaa 221  Q
    ||||| ||||||||||| |||| |||||||||||||||| |||||||| ||| |||   |||   ||| | |||||| |||||||||||||||| |||||    
T  15092266 agtaatagttgcaaaagcccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctccagctcgggaa 15092167  T
Q  222 gttcaaagttgaatccatg 240  Q
     | ||||||| | ||||||    
T  15092166 ctgcaaagttcattccatg 15092148  T

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Target: scaffold0295 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 740 - 651
Alignment:
Q  121 cagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttcatcgaaaacacctgtatatgacaagttcaacacctc 210  Q
    |||||||||||| || || |||| ||||||||| ||||||  ||||||| |||||||    |||| ||||| ||||||||| ||||||||    
T  740 cagtaacagttgtaatagcccacaacaattcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctc 651  T

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