View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13108_low_26 (Length: 266)
Name: NF13108_low_26
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 4887410 - 4887225
Alignment:
| Q |
25 |
taatcctttttccaaccttgtgaatatgccaaaatttatagacaggattcaatgcacttgtaagtgcaagttcgatggcataattctcattcagattctc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |
|
|
| T |
4887410 |
taatcctttttccaaccttgtgaatatgccataatttatagacaggattcaatgcacttgtaagttcaagttcgatggcataattctcaatcagatcctc |
4887311 |
T |
|
| Q |
125 |
gacatcgtaagctagttttctaatttctgatatcaaattctccatagtctcaccaccttcatcctgctttctatcagcatctctta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4887310 |
gacatcgtaagctagttttctaatttctgatatcaaattctttatagtctcaccaccttcatcctgctttctatcagcttctctta |
4887225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 4929988 - 4930100
Alignment:
| Q |
98 |
gatggcataattctcattcagattctcgacatcgtaagctagttttctaatttctgatatcaaattctccatagtctcaccaccttcatcctgctttcta |
197 |
Q |
| |
|
|||||||||| | ||| ||| || ||| ||||| ||||||| |||||| || ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4929988 |
gatggcataagtttcaatcacatcctcaacatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctgctttctc |
4930087 |
T |
|
| Q |
198 |
tcagcatctctta |
210 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
4930088 |
tcagcatccctta |
4930100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 210
Target Start/End: Original strand, 4918130 - 4918242
Alignment:
| Q |
98 |
gatggcataattctcattcagattctcgacatcgtaagctagttttctaatttctgatatcaaattctccatagtctcaccaccttcatcctgctttcta |
197 |
Q |
| |
|
|||||||||| | ||| ||| || ||| |||| ||||||| |||||| || ||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
4918130 |
gatggcataagtttcaatcacatcctcagcatcataagctaattttctgatctctgatatccaattctttatagtctcaccaccttcatcctgctttctc |
4918229 |
T |
|
| Q |
198 |
tcagcatctctta |
210 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
4918230 |
tcagcatccctta |
4918242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University