View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_29 (Length: 258)

Name: NF13108_low_29
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_29
NF13108_low_29
[»] chr1 (10 HSPs)
chr1 (1-239)||(30656557-30656795)
chr1 (4-236)||(30671721-30671953)
chr1 (1-239)||(30698499-30698737)
chr1 (4-239)||(30710385-30710620)
chr1 (1-236)||(30689613-30689848)
chr1 (1-239)||(30718656-30718894)
chr1 (102-233)||(16252066-16252197)
chr1 (102-240)||(33042540-33042678)
chr1 (121-164)||(30623894-30623937)
chr1 (169-239)||(15815146-15815216)
[»] chr4 (1 HSPs)
chr4 (30-176)||(56539186-56539332)
[»] chr2 (3 HSPs)
chr2 (125-169)||(38337630-38337674)
chr2 (118-176)||(4420146-4420204)
chr2 (126-174)||(6507664-6507712)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30656557 - 30656795
Alignment:
Q  1 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  30656557 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattat 30656656  T
Q  101 tacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30656657 tacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctaaccaaacccttttgccaccccttgttgtgtc 30656756  T
Q  201 ccttatttctgcagcatatttcccccaaggtcttttcct 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30656757 ccttatttctgcagcatatttcccccaaggtcttttcct 30656795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 30671721 - 30671953
Alignment:
Q  4 agtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattattac 103  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||||||    
T  30671721 agtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacggcattattac 30671820  T
Q  104 ctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtccct 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||    
T  30671821 ctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactgtcaaatgttccaagccaaacccttttaccaccccttgttgtgtctct 30671920  T
Q  204 tatttctgcagcatatttcccccaaggtctttt 236  Q
    |||||||||||||||||||||||||||||||||    
T  30671921 tatttctgcagcatatttcccccaaggtctttt 30671953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30698499 - 30698737
Alignment:
Q  1 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||    
T  30698499 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattat 30698598  T
Q  101 tacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtc 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || || |||||||| ||    
T  30698599 tacctctcattgagaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaactcttcttcctcctcttgttgtatc 30698698  T
Q  201 ccttatttctgcagcatatttcccccaaggtcttttcct 239  Q
     || || ||||||||| |||||||||||||||| |||||    
T  30698699 tctgatctctgcagcaaatttcccccaaggtctcttcct 30698737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 30710385 - 30710620
Alignment:
Q  4 agtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattattac 103  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||| ||||| | |||||||||||    
T  30710385 agtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaaagaaaaattgaggaaagcattattac 30710484  T
Q  104 ctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtccct 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || || |||||||| || ||    
T  30710485 ctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttcttcctcctcttgttgtatctct 30710584  T
Q  204 tatttctgcagcatatttcccccaaggtcttttcct 239  Q
     ||||||||||||||||| |||||| ||||||||||    
T  30710585 gatttctgcagcatattttccccaacgtcttttcct 30710620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30689613 - 30689848
Alignment:
Q  1 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattat 100  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||| ||    
T  30689613 tttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcat 30689712  T
Q  101 tacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || || |||||||||||    
T  30689713 aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtgtc 30689812  T
Q  201 ccttatttctgcagcatatttcccccaaggtctttt 236  Q
     || || ||||| ||||| || ||||||||||||||    
T  30689813 tctgatctctgctgcatactttccccaaggtctttt 30689848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30718656 - 30718894
Alignment:
Q  1 tttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattat 100  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||| ||    
T  30718656 tttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcat 30718755  T
Q  101 tacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtc 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | || || |||||||| ||    
T  30718756 aacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttccaagccaaacccttcttcctcctcttgttgtatc 30718855  T
Q  201 ccttatttctgcagcatatttcccccaaggtcttttcct 239  Q
     || || ||||||||| |||||||||||||||| |||||    
T  30718856 tctaatctctgcagcaaatttcccccaaggtctcttcct 30718894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 16252066 - 16252197
Alignment:
Q  102 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtcc 201  Q
    ||||||||||||||| |||||||||||||||||||  || ||  |||||||||||||||||||||||| ||| |||||| |||||   || ||||  |||    
T  16252066 acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttcctaaccatacccttatgccatgtctagttgaatcc 16252165  T
Q  202 cttatttctgcagcatatttcccccaaggtct 233  Q
    ||||||||||| ||| |||||||||| |||||    
T  16252166 cttatttctgctgcaaatttcccccatggtct 16252197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 240
Target Start/End: Complemental strand, 33042678 - 33042540
Alignment:
Q  102 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaacccttttgccaccccttgttgtgtcc 201  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||||||||| |||||  | |||  ||| || |  ||     
T  33042678 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttcctagccacaccctcattccattcctcgtcgaatct 33042579  T
Q  202 cttatttctgcagcatatttcccccaaggtcttttcctt 240  Q
    ||||| ||||| ||| |||||||||| |||||| |||||    
T  33042578 cttatctctgctgcaaatttcccccatggtcttctcctt 33042540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 164
Target Start/End: Original strand, 30623894 - 30623937
Alignment:
Q  121 gcttgatcataagctaaagcagcatcttcagcactatcaaatgt 164  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  30623894 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgt 30623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 15815216 - 15815146
Alignment:
Q  169 agccaaacccttttgccaccccttgttgtgtcccttatttctgcagcatatttcccccaaggtcttttcct 239  Q
    |||||||||||| | || || |||| ||| || || |||||||||||| |||||||||||||||| |||||    
T  15815216 agccaaacccttcttcctcctcttgctgtatctctgatttctgcagcaaatttcccccaaggtctcttcct 15815146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 30 - 176
Target Start/End: Complemental strand, 56539332 - 56539186
Alignment:
Q  30 tctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacagcattattacctctcattgaaaatgcagcttgatca 129  Q
    |||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||||||||| ||||||||||||||| ||||||||||||||||||     
T  56539332 tctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcg 56539233  T
Q  130 taagctaaagcagcatcttcagcactatcaaatgttcctagccaaac 176  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  56539232 taagctaaagcagcatcctcagcactgtcaaatgttccaagccaaac 56539186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 38337674 - 38337630
Alignment:
Q  125 gatcataagctaaagcagcatcttcagcactatcaaatgttccta 169  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttccta 38337630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 4420146 - 4420204
Alignment:
Q  118 gcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttcctagccaaac 176  Q
    ||||||| |||||||||||||||||| | ||||||  |||||||||| || ||||||||    
T  4420146 gcagctttatcataagctaaagcagcttgttcagctgtatcaaatgtaccaagccaaac 4420204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 6507664 - 6507712
Alignment:
Q  126 atcataagctaaagcagcatcttcagcactatcaaatgttcctagccaa 174  Q
    ||||||||| |||||||| |||| |||| ||||||||||||||| ||||    
T  6507664 atcataagcaaaagcagcttcttgagcagtatcaaatgttcctaaccaa 6507712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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