View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13108_low_3 (Length: 848)
Name: NF13108_low_3
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 759; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 759; E-Value: 0
Query Start/End: Original strand, 17 - 831
Target Start/End: Original strand, 21262032 - 21262846
Alignment:
| Q |
17 |
atgaagtgttccaaaaatttcaacaattccagaaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262032 |
atgaagtgttccaaaaatttcaacaattccataaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
21262131 |
T |
|
| Q |
117 |
gaatcaacaatttcgtgaatatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcactgcagaacgtaagaat |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
21262132 |
gaatcaacaatttcgtgaatacttccaacaacatggacatattcacgaaaccacttgtccacaaactccccagcaaaatggcaccgcagaacgtaagaat |
21262231 |
T |
|
| Q |
217 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgatgctgttactacagcagtgtatctcattaata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262232 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgatgctgttactacagcagtgtatctcattaata |
21262331 |
T |
|
| Q |
317 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacagtacaaatgctcccacctcgagtctttgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21262332 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacaatacaaatgctcccacctcgagtctttgg |
21262431 |
T |
|
| Q |
417 |
ttgtgttgcatttgttcacctacacaaaaatcagcgaacaaaacttgatccttgtgccattcgctgcctgtttttggggtatggtgtacaccagaaaggg |
516 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21262432 |
ttgtgttgcatttgttcacctacataaaaatcagcgaacaaaacttgatccttgtgccattcgctgcctttttttggggtatggtgtacaccagaaaggg |
21262531 |
T |
|
| Q |
517 |
taccgttgctttgaccctatcactcggcatacatatgtaactatggatgtgactttcctcgaattcgacactttctatgcacctccctcatccaattctt |
616 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21262532 |
taccgttgctttgaccctatcaatcggcatacatatgtaactatggatgtgactttcctcgaatttgacactttctatgcacctccctcatccaattctt |
21262631 |
T |
|
| Q |
617 |
ctcttcatggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
716 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21262632 |
ctcttcagggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
21262731 |
T |
|
| Q |
717 |
tcaaacatttttcccttctccagaagttgaagcaacaaacccccctctttctccagtatccaatgactcttctttagagaatatcgttgaggttagctct |
816 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21262732 |
tcaaacatttttcccttctctagaagttgaagcaacaaacccccctctctctccagtatccaatgactcttctttagaaaatatcgttgaggttagctct |
21262831 |
T |
|
| Q |
817 |
cctgttcctcttgat |
831 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
21262832 |
cctgttactcttgat |
21262846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 328 - 566
Target Start/End: Complemental strand, 32223543 - 32223305
Alignment:
| Q |
328 |
aaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacagtacaaatgctcccacctcgagtctttggttgtgttgcat |
427 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| | |||||| |||| ||||| |||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
32223543 |
aaggttcttgagtttaaaactccgctgcaaactttgtctatatttgtaccacttgccacaatacaaatgctgccacctcgagtctttggttgtgttgtgt |
32223444 |
T |
|
| Q |
428 |
ttgttcacctacacaaaaatcagcgaacaaaacttgatccttgtgccattcgctgcctgtttttggggtatggtgtacaccagaaagggtaccgttgctt |
527 |
Q |
| |
|
||||||| ||||| ||||| || || ||||| ||||||||||||| |||| || || | |||||| ||| ||||||||||||||||||| ||||||| |
|
|
| T |
32223443 |
ttgttcatctacataaaaaccaacgcacaaagcttgatccttgtgttgttcgttgtctttgtttgggatattgtgtacaccagaaagggtatcgttgcta |
32223344 |
T |
|
| Q |
528 |
tgaccctatcactcggcatacatatgtaactatggatgt |
566 |
Q |
| |
|
||| ||||| |||| || | ||||| |||||||||||| |
|
|
| T |
32223343 |
tgatcctattgctcgacacatatatgcaactatggatgt |
32223305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 17 - 831
Target Start/End: Original strand, 47802604 - 47803418
Alignment:
| Q |
17 |
atgaagtgttccaaaaatttcaacaattccagaaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47802604 |
atgaagtgttccaaaaatttcaacaattccataaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
47802703 |
T |
|
| Q |
117 |
gaatcaacaatttcgtgaatatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcactgcagaacgtaagaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47802704 |
gaatcaacaatttcgtgaatatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcaccgcagaacgtaagaat |
47802803 |
T |
|
| Q |
217 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgatgctgttactacagcagtgtatctcattaata |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47802804 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgataatgttactacagcagtgtatctcattaata |
47802903 |
T |
|
| Q |
317 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacagtacaaatgctcccacctcgagtctttgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47802904 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacaatacaaatgctcccacctcgagtctttgg |
47803003 |
T |
|
| Q |
417 |
ttgtgttgcatttgttcacctacacaaaaatcagcgaacaaaacttgatccttgtgccattcgctgcctgtttttggggtatggtgtacaccagaaaggg |
516 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47803004 |
ttgtgttgcatttgttcacctacataaaaatcagcaaacaaaacttgatccttgtgccattcgctgcctttttttggggtatggtgtacaccagaaaggg |
47803103 |
T |
|
| Q |
517 |
taccgttgctttgaccctatcactcggcatacatatgtaactatggatgtgactttcctcgaattcgacactttctatgcacctccctcatccaattctt |
616 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
47803104 |
taccgttgctttgaccctatcaatcggcatacatatgtaactatggatgtgactttcctcgaatttgacactttctatgcacctccctcatccaattctt |
47803203 |
T |
|
| Q |
617 |
ctcttcatggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
716 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47803204 |
ctcttcagggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
47803303 |
T |
|
| Q |
717 |
tcaaacatttttcccttctccagaagttgaagcaacaaacccccctctttctccagtatccaatgactcttctttagagaatatcgttgaggttagctct |
816 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47803304 |
tcaaacatttttcccttctctagaagttgaagcaacaaacccccctctctctccagtatccaatgactcttctttagaaaatatcgttgaggttagctct |
47803403 |
T |
|
| Q |
817 |
cctgttcctcttgat |
831 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
47803404 |
cctgttactcttgat |
47803418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 751; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 751; E-Value: 0
Query Start/End: Original strand, 17 - 831
Target Start/End: Original strand, 6845175 - 6845989
Alignment:
| Q |
17 |
atgaagtgttccaaaaatttcaacaattccagaaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6845175 |
atgaagtgttccaaaaatttcaacaattccataaaatgattcaaactcaatacttatcaaagattcgtattcttcgttctgataatggtggcgaatatgt |
6845274 |
T |
|
| Q |
117 |
gaatcaacaatttcgtgaatatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcactgcagaacgtaagaat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6845275 |
gaatcaacaatttcgtgaatatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcaccgcagaacgtaagaat |
6845374 |
T |
|
| Q |
217 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgatgctgttactacagcagtgtatctcattaata |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6845375 |
cgccatatccttgaaactgctcgtgctcttttacttggagctcatgtgcctagccaccattgggctgatgttgttactacagcagtgtatctcattaata |
6845474 |
T |
|
| Q |
317 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacagtacaaatgctcccacctcgagtctttgg |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6845475 |
ggatgccatcgaaggttcttgattttaagactccgctgcaaactttgtcaacatttgtgtcactacccacaatacaaatgctcccacctcgagtctttgg |
6845574 |
T |
|
| Q |
417 |
ttgtgttgcatttgttcacctacacaaaaatcagcgaacaaaacttgatccttgtgccattcgctgcctgtttttggggtatggtgtacaccagaaaggg |
516 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6845575 |
ttgtgttgcatttgttcacctacataaaaatcagcaaacaaaacttgatccttgtgccattcgctgcctttttttggggtatggtgtacaccagaaaggg |
6845674 |
T |
|
| Q |
517 |
taccgttgctttgaccctatcactcggcatacatatgtaactatggatgtgactttcctcgaattcgacactttctatgcacctccctcatccaattctt |
616 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
6845675 |
taccgttgctttgaccctatcaatcggcatacatatgtaactacggatgtgactttcctcgaatttgacactttctatgcacctccctcatcaaattctt |
6845774 |
T |
|
| Q |
617 |
ctcttcatggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
716 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6845775 |
ctcttcagggggagacaagagaagaagaatcgaattggatgatgtttgactggttcaatcatatcgatacaccatctcatgaggtttccgatgaggctcc |
6845874 |
T |
|
| Q |
717 |
tcaaacatttttcccttctccagaagttgaagcaacaaacccccctctttctccagtatccaatgactcttctttagagaatatcgttgaggttagctct |
816 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6845875 |
tcaaacatttttcccttctctagaagttgaagcaacaaacccccctctctctccagtatccaatgactcttctttagaaaatatcgttgaggttagctct |
6845974 |
T |
|
| Q |
817 |
cctgttcctcttgat |
831 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
6845975 |
cctgttactcttgat |
6845989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 407 - 471
Target Start/End: Original strand, 22856353 - 22856417
Alignment:
| Q |
407 |
gagtctttggttgtgttgcatttgttcacctacacaaaaatcagcgaacaaaacttgatccttgt |
471 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| |||||||| || || ||||||||||||||| |
|
|
| T |
22856353 |
gagtctttggatgtgttgcctttgttcatctacataaaaatcaacgcactaaacttgatccttgt |
22856417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 22856132 - 22856263
Alignment:
| Q |
136 |
tatttccaacaacatggacttattcacgaaaccacttgtccacaaactccccagcaaaatggcactgcagaacgtaagaatcgccatatccttgaaactg |
235 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| | ||||| || || ||||| || ||||||||| ||| | || |||||||| ||||| | |
|
|
| T |
22856132 |
tatttccaacttcatggacttattcatgaaacttcttgtgctcaaacaccacaacaaaacggggctgcagaacagaagcaccgacatatcctagaaacag |
22856231 |
T |
|
| Q |
236 |
ctcgtgctcttttacttggagctcatgtgcct |
267 |
Q |
| |
|
|||||||||| || |||| |||||| ||||| |
|
|
| T |
22856232 |
ctcgtgctctcctaattggtgctcatatgcct |
22856263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 393 - 473
Target Start/End: Complemental strand, 524766 - 524686
Alignment:
| Q |
393 |
aatgctcccacctcgagtctttggttgtgttgcatttgttcacctacacaaaaatcagcgaacaaaacttgatccttgtgc |
473 |
Q |
| |
|
|||| |||| || ||||||||||| |||||||| || ||||| ||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
524766 |
aatgatccctccacgagtctttggatgtgttgccttcgttcatctacataaaaatcaacgcactaaacttgatccttgtgc |
524686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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