View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_30 (Length: 252)
Name: NF13108_low_30
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13008783 - 13009018
Alignment:
| Q |
1 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13008783 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
13008882 |
T |
|
| Q |
101 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaa |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13008883 |
tttagaaattggtaagattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaa |
13008982 |
T |
|
| Q |
201 |
gataaagattcatctcaatttggtcattttagatca |
236 |
Q |
| |
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|||||||||||||| ||| ||||||||||||||||| |
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| T |
13008983 |
gataaagattcatcacaagttggtcattttagatca |
13009018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12976384 - 12976619
Alignment:
| Q |
1 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12976384 |
gacaatggaaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
12976483 |
T |
|
| Q |
101 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaa |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
12976484 |
tttagaaattggtaagattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttagtagaaacaatgttagtaaa |
12976583 |
T |
|
| Q |
201 |
gataaagattcatctcaatttggtcattttagatca |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12976584 |
gataaagattcatctcaatttggtcattttagatca |
12976619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13031139 - 13031374
Alignment:
| Q |
1 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13031139 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggataataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
13031238 |
T |
|
| Q |
101 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || | |
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| T |
13031239 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaataaaaatagatcatttggtagaaacaatgttaataga |
13031338 |
T |
|
| Q |
201 |
gataaagattcatctcaatttggtcattttagatca |
236 |
Q |
| |
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||||||| ||||||||| ||||||||||||||||| |
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| T |
13031339 |
gataaagggtcatctcaagttggtcattttagatca |
13031374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 13012342 - 13012576
Alignment:
| Q |
1 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13012342 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
13012441 |
T |
|
| Q |
101 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacattgttagtaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | |
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| T |
13012442 |
tttagaaattggtatgattgatgctagtagtaaagattctaataatgtttcttcctttggtaatagaaatagatcatttggtagaaacaatgttaatgga |
13012541 |
T |
|
| Q |
201 |
gataaagattcatctcaatttggtcattttagatca |
236 |
Q |
| |
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||||||| ||||||||| |||| |||||||||||| |
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| T |
13012542 |
gataaagggtcatctcaagttgg-cattttagatca |
13012576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 12997544 - 12997657
Alignment:
| Q |
1 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12997544 |
gacaatgggaaaaatcgttagagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttga |
12997643 |
T |
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| Q |
101 |
tttagaaattggta |
114 |
Q |
| |
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|||||||||||||| |
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| T |
12997644 |
tttagaaattggta |
12997657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 44460352 - 44460270
Alignment:
| Q |
21 |
gagattgttctttgtgcattggatcataaaagaatcattggggaaggccaatttcgtcgcgctaagaaagctcttgttgattt |
103 |
Q |
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||||||||||||| ||||||||||||| | || | ||||| ||||| ||||||||| | || ||||||||||| ||||||| |
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| T |
44460352 |
gagattgttctttatgcattggatcatcagaggagtattggtgaaggacaatttcgtagagcgaagaaagctctaattgattt |
44460270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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