View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_37 (Length: 236)

Name: NF13108_low_37
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_37
NF13108_low_37
[»] chr1 (10 HSPs)
chr1 (1-222)||(48887733-48887954)
chr1 (98-191)||(36160539-36160631)
chr1 (105-191)||(31884517-31884602)
chr1 (98-164)||(49731212-49731278)
chr1 (109-199)||(50127409-50127498)
chr1 (131-195)||(13969182-13969246)
chr1 (133-201)||(17644838-17644906)
chr1 (98-191)||(8279706-8279799)
chr1 (134-187)||(30941555-30941608)
chr1 (121-158)||(33148902-33148939)
[»] chr2 (8 HSPs)
chr2 (98-167)||(5525335-5525404)
chr2 (131-191)||(1870576-1870636)
chr2 (107-191)||(11610469-11610552)
chr2 (98-165)||(604729-604799)
chr2 (152-192)||(8580481-8580521)
chr2 (154-202)||(39401501-39401549)
chr2 (139-203)||(40574234-40574298)
chr2 (133-197)||(41436289-41436353)
[»] chr5 (7 HSPs)
chr5 (100-191)||(1447606-1447697)
chr5 (107-167)||(6830262-6830322)
chr5 (131-191)||(8435027-8435087)
chr5 (109-191)||(7609601-7609682)
chr5 (131-189)||(28511233-28511290)
chr5 (142-192)||(39034545-39034595)
chr5 (133-166)||(18241342-18241375)
[»] chr6 (6 HSPs)
chr6 (98-159)||(12677822-12677883)
chr6 (133-189)||(32134018-32134074)
chr6 (98-164)||(2911517-2911583)
chr6 (98-191)||(30929465-30929559)
chr6 (132-192)||(20208193-20208253)
chr6 (132-192)||(22102216-22102276)
[»] chr7 (7 HSPs)
chr7 (99-191)||(7833795-7833887)
chr7 (129-165)||(42061222-42061258)
chr7 (109-192)||(33194691-33194774)
chr7 (98-160)||(26241655-26241717)
chr7 (153-198)||(32956487-32956532)
chr7 (106-176)||(39786510-39786580)
chr7 (124-161)||(31850825-31850862)
[»] chr8 (10 HSPs)
chr8 (121-192)||(12981526-12981597)
chr8 (100-166)||(23797545-23797611)
chr8 (130-196)||(11150888-11150954)
chr8 (132-166)||(10451893-10451927)
chr8 (122-191)||(19781436-19781505)
chr8 (130-192)||(20542356-20542418)
chr8 (106-196)||(35901474-35901563)
chr8 (133-186)||(23725710-23725763)
chr8 (131-163)||(35864631-35864663)
chr8 (131-191)||(41726866-41726926)
[»] chr4 (6 HSPs)
chr4 (131-189)||(48202457-48202515)
chr4 (99-194)||(20775039-20775134)
chr4 (109-200)||(31647683-31647773)
chr4 (133-202)||(30694245-30694314)
chr4 (131-191)||(16831183-16831243)
chr4 (131-163)||(55090779-55090811)
[»] chr3 (9 HSPs)
chr3 (112-197)||(46647448-46647532)
chr3 (109-193)||(44291291-44291374)
chr3 (98-161)||(37043036-37043099)
chr3 (100-190)||(31069612-31069702)
chr3 (131-197)||(48338777-48338843)
chr3 (134-195)||(4195416-4195477)
chr3 (106-191)||(34228316-34228400)
chr3 (106-166)||(635763-635823)
chr3 (124-192)||(37822676-37822744)
[»] scaffold0299 (1 HSPs)
scaffold0299 (131-191)||(18100-18160)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48887954 - 48887733
Alignment:
Q  1 agctagaactagatcctattccaagatgtaaagaattgataatactacgacttataaacttatgatgaagttaccatgttaaaacccatttcaatctatt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48887954 agctagaactagatactattccaagatgtaaagaattgataatactacgacttataaacttatgatgaagttaccatgttaaaacccatttcaatctatt 48887855  T
Q  101 tgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattttaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  48887854 tgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccaggacactggttagcattctccatattttaa 48887755  T
Q  201 taccctaggaatagacatacat 222  Q
    ||||||||||||||||||||||    
T  48887754 taccctaggaatagacatacat 48887733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 36160631 - 36160539
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||||| || |||| ||| || ||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  36160631 atttgacaaagtaataattacactactttttattaagaacttacttgttttaattgcttaaccaatg-ctccagggcattggttagcattctcc 36160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 191
Target Start/End: Original strand, 31884517 - 31884602
Alignment:
Q  105 caaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||||| ||| |||||||||| | ||||||||||||| |||| || ||||||||||||||||| ||||| |||||| ||||||||    
T  31884517 caaataataattacattactttttaataaaaacttactttttttggt-gcttaaccaatgcctccggggcaatggttaacattctcc 31884602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 49731212 - 49731278
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatg 164  Q
    ||||||||||||||| |||  | ||||||| ||||||||||||||||||||||||| ||||||||||    
T  49731212 atttgaccaaataataattatactactttttattaaaaacttacttgttttagttgtttaaccaatg 49731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 50127409 - 50127498
Alignment:
Q  109 taatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatatttta 199  Q
    |||| ||| |||||||||| | ||||||||||||| |||| ||  ||||||||||||| |  |||||||||||| ||||||||||||||||    
T  50127409 taataattacattactttttaataaaaacttacttcttttggta-cttaaccaatgccccgggggcactggttaacattctccatatttta 50127498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 13969182 - 13969246
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatat 195  Q
    |||||||||||||||||| |||||||||||||| |     |||||||||||| ||||||||||||    
T  13969182 taaaaacttacttgttttggttgcttaaccaatactcttggggcactggttaacattctccatat 13969246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 17644838 - 17644906
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattttaat 201  Q
    |||||||||||||||| | |||||||||| |||| | ||| || ||||||||||||||| || ||||||    
T  17644838 aaaacttacttgttttggatgcttaaccattgccccaaggacattggttagcattctccttaatttaat 17644906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 8279799 - 8279706
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||||| |||||||||||  |  || ||| ||||||| |||| |||||||||||| ||||||||||||    ||||||| |||||| ||||||    
T  8279799 atttgactaaataatgattatacaacgttttattaaaatcttaattgttttagttgattaaccaatgcccttggggcactagttagctttctcc 8279706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Original strand, 30941555 - 30941608
Alignment:
Q  134 aaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcatt 187  Q
    ||||||||||||| | | ||||||||||||||| | |||||| |||||||||||    
T  30941555 aaacttacttgttctggatgcttaaccaatgccccaagggcattggttagcatt 30941608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 33148939 - 33148902
Alignment:
Q  121 tacttttcattaaaaacttacttgttttagttgcttaa 158  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  33148939 tactttttattaaaaacttacttattttagttgcttaa 33148902  T

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Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 5525335 - 5525404
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcct 167  Q
    |||||||||||||||||||  | ||||||| ||||||||||||||| |||||||||||||||||||||||    
T  5525335 atttgaccaaataatgattatactactttttattaaaaacttacttattttagttgcttaaccaatgcct 5525404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 1870576 - 1870636
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||| ||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||    
T  1870576 taaaaagttacttgtttttgttgcttaaccaatgccccgagggcactgtttagcattctcc 1870636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 11610469 - 11610552
Alignment:
Q  107 aataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||| |||||||||||||| | | |||||||||||  ||| || |||||||||||||| |  |||||||||||| ||||||||    
T  11610469 aataataattgcattactttttaatgaaaacttacttcatttggt-gcttaaccaatgccccgggggcactggttaacattctcc 11610552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 604799 - 604729
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttact---tgttttagttgcttaaccaatgc 165  Q
    |||||||||| ||||||||  | ||||||| |||||||| |||||   |||||||| ||||||||||||||    
T  604799 atttgaccaagtaatgattatactactttttattaaaaatttactatttgttttagatgcttaaccaatgc 604729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 8580521 - 8580481
Alignment:
Q  152 tgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    |||||||||||||||   |||||||||||||||||||||||    
T  8580521 tgcttaaccaatgcccttagggcactggttagcattctcca 8580481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 39401549 - 39401501
Alignment:
Q  154 cttaaccaatgcctccagggcactggttagcattctccatattttaata 202  Q
    |||| |||||||| | |||||| ||||||||||||||| ||||||||||    
T  39401549 cttatccaatgccccaagggcaatggttagcattctccttattttaata 39401501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 40574234 - 40574298
Alignment:
Q  139 tacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattttaatac 203  Q
    |||||||||| | |||||||||| ||||    ||||||||||||||||||||| | |||||||||    
T  40574234 tacttgttttggatgcttaaccattgcccttggggcactggttagcattctcctttttttaatac 40574298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Complemental strand, 41436353 - 41436289
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattt 197  Q
    |||||||||||||||| | |||||||||| |||||   |||||||| ||| |||||||| |||||    
T  41436353 aaaacttacttgttttggatgcttaaccattgcctttggggcactgattaacattctccttattt 41436289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 1447606 - 1447697
Alignment:
Q  100 ttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||||| |||| ||| || ||||||||||||||||||||||| |||| |||||||||||||||||   |||||| | |||||||||||||    
T  1447606 ttgaccaagtaataattacactacttttcattaaaaacttacttatttttgttgcttaaccaatgccctaagggcaatagttagcattctcc 1447697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 167
Target Start/End: Complemental strand, 6830322 - 6830262
Alignment:
Q  107 aataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcct 167  Q
    |||||| ||| || ||||||| || ||||| ||||||||||| ||||||||||||||||||    
T  6830322 aataataattacactacttttaataaaaaaattacttgttttggttgcttaaccaatgcct 6830262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 8435087 - 8435027
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||| ||||||| |||| | |||||||||||||||||  |||||||||||| ||||||||    
T  8435087 taaaatcttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctcc 8435027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 191
Target Start/End: Original strand, 7609601 - 7609682
Alignment:
Q  109 taatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||| ||| |||||||||| | ||||||||||||| |||| | ||||||||||||||| |  | |||||||||| ||||||||    
T  7609601 taataattacattactttttaataaaaacttacttctttt-ggtgcttaaccaatgccccgggagcactggttaacattctcc 7609682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 28511233 - 28511290
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattct 189  Q
    ||||||||||| |||||| |||||||||||||| || ||||||||| ||||| ||||||    
T  28511233 taaaaacttacatgttttggttgcttaaccaatacc-ccagggcaccggttaacattct 28511290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 39034545 - 39034595
Alignment:
Q  142 ttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    ||||||| |||||| ||||||||||  |||||||||| |||||||||||||    
T  39034545 ttgttttggttgctaaaccaatgccctcagggcactgtttagcattctcca 39034595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 18241375 - 18241342
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcc 166  Q
    |||||||||||||||||| |||||||||||||||    
T  18241375 aaaacttacttgttttagatgcttaaccaatgcc 18241342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 12677883 - 12677822
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaac 159  Q
    |||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||    
T  12677883 atttgaccaagtaatgattacactactttttattaaaaacttacttgttttagttgcttaac 12677822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 32134074 - 32134018
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattct 189  Q
    ||||||||||| |||||| |||||||||||||||   |||||||| |||||||||||    
T  32134074 aaaacttacttattttagatgcttaaccaatgcccttagggcactagttagcattct 32134018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Original strand, 2911517 - 2911583
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatg 164  Q
    |||||| ||| ||||||||  | |||||||  ||||||||||| |||||||| ||||||||||||||    
T  2911517 atttgatcaagtaatgattatactacttttttttaaaaacttatttgttttaattgcttaaccaatg 2911583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 30929559 - 30929465
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaactt-acttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||| |||||||| |||  | ||||||| |||||||| || |||||||||||| ||||||||||||||    | ||||| |||||||||||||    
T  30929559 atttgatcaaataataattatactactttttattaaaaaatttacttgttttagtcgcttaaccaatgcccttggagcactagttagcattctcc 30929465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 20208193 - 20208253
Alignment:
Q  132 aaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    ||||| ||||||||||| |||| |||||||||||||  |||| |||  |||||||||||||    
T  20208193 aaaaagttacttgttttggttgtttaaccaatgccttgagggaactatttagcattctcca 20208253  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 22102216 - 22102276
Alignment:
Q  132 aaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    ||||| ||||||||||| |||| |||||||||||||  |||| |||  |||||||||||||    
T  22102216 aaaaagttacttgttttggttgtttaaccaatgccttgagggaactatttagcattctcca 22102276  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Original strand, 7833795 - 7833887
Alignment:
Q  99 tttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||||||| |||| |||||| ||||||| | ||||| |||||||||||| | |||||||||||||||  | ||||| |||||| ||||||||    
T  7833795 tttgaccaactaattattgcactactttttaataaaatcttacttgttttggctgcttaaccaatgccctcggggcattggttaacattctcc 7833887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 42061258 - 42061222
Alignment:
Q  129 attaaaaacttacttgttttagttgcttaaccaatgc 165  Q
    |||||||||||||||||||||||||||||||||||||    
T  42061258 attaaaaacttacttgttttagttgcttaaccaatgc 42061222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 192
Target Start/End: Complemental strand, 33194774 - 33194691
Alignment:
Q  109 taatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    |||||||| || ||||||| |||||||| |||||| |||||||||||||||||||  ||   || || ||||||||||||||||    
T  33194774 taatgattacactactttttattaaaaatttacttattttagttgcttaaccaatatcttggggacaatggttagcattctcca 33194691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 26241655 - 26241717
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaacc 160  Q
    |||||| |||||||| |||  | ||||||| |||||||| |||||||||||||||||||||||    
T  26241655 atttgatcaaataataattatactactttttattaaaaagttacttgttttagttgcttaacc 26241717  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 32956532 - 32956487
Alignment:
Q  153 gcttaaccaatgcctccagggcactggttagcattctccatatttt 198  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||    
T  32956532 gcttaaccaatgcctcaagggcactcattagcattctccatatttt 32956487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 39786510 - 39786580
Alignment:
Q  106 aaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcac 176  Q
    ||||||| ||| || ||||||| || ||||| ||| ||||||| ||||||||||||||||||  |||||||    
T  39786510 aaataataattacactacttttaataaaaaagttatttgttttggttgcttaaccaatgccttgagggcac 39786580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 31850825 - 31850862
Alignment:
Q  124 ttttcattaaaaacttacttgttttagttgcttaacca 161  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  31850825 ttttcataaaaaacttacttgttttagatgcttaacca 31850862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 12981597 - 12981526
Alignment:
Q  121 tacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    ||||||| ||||||||||||||| |||||| |||||||||||||| |  |||||| | ||||||||||||||    
T  12981597 tactttttattaaaaacttacttattttaggtgcttaaccaatgcatttagggcattagttagcattctcca 12981526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 23797545 - 23797611
Alignment:
Q  100 ttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcc 166  Q
    |||||||| |||| ||| ||| ||||||||||||||| |||||||||||||||| ||||||| ||||    
T  23797545 ttgaccaagtaataatttcatcacttttcattaaaaatttacttgttttagttgtttaaccattgcc 23797611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 11150954 - 11150888
Alignment:
Q  130 ttaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatatt 196  Q
    |||||||||||||| ||||   |||||||||||||||   |||||| ||||||||||||||||||||    
T  11150954 ttaaaaacttacttattttgaatgcttaaccaatgcccttagggcagtggttagcattctccatatt 11150888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 10451927 - 10451893
Alignment:
Q  132 aaaaacttacttgttttagttgcttaaccaatgcc 166  Q
    ||||| |||||||||||||||||||||||||||||    
T  10451927 aaaaaattacttgttttagttgcttaaccaatgcc 10451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 19781436 - 19781505
Alignment:
Q  122 acttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagg-gcactggttagcattctcc 191  Q
    |||||| || ||||| ||||||||||| ||||||||||||||||| ||||| |||||| ||| ||||||||    
T  19781436 actttttataaaaaaattacttgttttggttgcttaaccaatgcc-ccaggagcactgtttaacattctcc 19781505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 20542418 - 20542356
Alignment:
Q  130 ttaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    ||||||||||||| ||||| | |||||||||||||||    |||||| |||||||||||||||    
T  20542418 ttaaaaacttactcgttttggatgcttaaccaatgcccttggggcacgggttagcattctcca 20542356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 35901474 - 35901563
Alignment:
Q  106 aaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatatt 196  Q
    ||||||||||||||  ||||||   |||||||||||||||||| | |||||||||||| || |   ||||| ||||| |||||||||||||    
T  35901474 aaataatgattgcacaactttttcataaaaacttacttgttttggatgcttaaccaatacc-ctttggcaccggttaacattctccatatt 35901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 23725710 - 23725763
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcat 186  Q
    |||||||||||||||| | |||||||||||||||    ||||||||||||||||    
T  23725710 aaaacttacttgttttggatgcttaaccaatgccctgggggcactggttagcat 23725763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 35864663 - 35864631
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaat 163  Q
    |||||||||||||||||||| ||||||||||||    
T  35864663 taaaaacttacttgttttagatgcttaaccaat 35864631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Complemental strand, 41726926 - 41726866
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||||||||||| |||||| |||||||||| ||||   |||||||| |||| ||||||||    
T  41726926 taaaaacttacttattttagatgcttaaccattgcccttagggcactagttatcattctcc 41726866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 48202515 - 48202457
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattct 189  Q
    ||||||||||| ||||||  |||||||||||||||| |  |||||||||||||||||||    
T  48202515 taaaaacttacctgttttgtttgcttaaccaatgcccctggggcactggttagcattct 48202457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 194
Target Start/End: Complemental strand, 20775134 - 20775039
Alignment:
Q  99 tttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccata 194  Q
    ||||| |||||||| ||| ||| ||||||   |||||||||||||||||| | ||||||||||||| ||   | |||||  |||||||||||||||    
T  20775134 tttgatcaaataattattacataactttttcataaaaacttacttgttttggatgcttaaccaatgtctttggagcactatttagcattctccata 20775039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 31647773 - 31647683
Alignment:
Q  109 taatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattttaa 200  Q
    |||| ||| |||||||||| | |||||||||| || |||| || ||||||||||| ||||  |||||| ||||| |||||||| ||||||||    
T  31647773 taataattacattactttttaataaaaacttatttcttttggt-gcttaaccaatacctcgggggcaccggttaacattctccttattttaa 31647683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 30694314 - 30694245
Alignment:
Q  133 aaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattttaata 202  Q
    |||||||||||||||| ||||| |||||||| ||    |||||||  |||||||||||||| ||||||||    
T  30694314 aaaacttacttgttttggttgcataaccaattcccttggggcactctttagcattctccatgttttaata 30694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 16831183 - 16831243
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||| ||| ||||||| ||||||||| ||||||||  ||| ||||| ||||||||||||    
T  16831183 taaaaagttatttgttttggttgcttaatcaatgccttaaggacactgtttagcattctcc 16831243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 55090811 - 55090779
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaat 163  Q
    |||||| ||||||||||||||||||||||||||    
T  55090811 taaaaagttacttgttttagttgcttaaccaat 55090779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 46647532 - 46647448
Alignment:
Q  112 tgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatg-cctccagggcactggttagcattctccatattt 197  Q
    ||||| || ||||||| |||||||||||||||||| ||||| ||||||||||| |||  | |||||||||||||||||||| |||||    
T  46647532 tgattacactactttttattaaaaacttacttgttatagtt-cttaaccaatgtccttga-ggcactggttagcattctccttattt 46647448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 193
Target Start/End: Original strand, 44291291 - 44291374
Alignment:
Q  109 taatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccat 193  Q
    |||| ||| |||||||||| | |||| |||||||| |||| || |||||||||||||| |  |||||||||||| ||||||||||    
T  44291291 taataattacattactttttaataaatacttacttcttttggt-gcttaaccaatgccccgggggcactggttaacattctccat 44291374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 37043036 - 37043099
Alignment:
Q  98 atttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaacca 161  Q
    |||||| ||| ||||||||  | ||||||| |||||||||||||||| |||||||| |||||||    
T  37043036 atttgatcaagtaatgattatactactttttattaaaaacttacttgatttagttgtttaacca 37043099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 31069612 - 31069702
Alignment:
Q  100 ttgaccaaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctc 190  Q
    |||||||| |||| ||| || ||||||| ||||||||| ||||| |||| |||||||||  |||||    |||||| ||||||||||||||    
T  31069612 ttgaccaagtaataattacactactttttattaaaaacgtacttattttggttgcttaattaatgctcttagggcattggttagcattctc 31069702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 48338843 - 48338777
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatattt 197  Q
    |||||||||||||||||| | |||||||||| ||||   || ||||| ||||||||||||| |||||    
T  48338843 taaaaacttacttgttttggatgcttaaccattgcccttagagcactagttagcattctccttattt 48338777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 195
Target Start/End: Original strand, 4195416 - 4195477
Alignment:
Q  134 aaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctccatat 195  Q
    |||||||||| |||||||   |||||||||||| | || ||| |||||||||||||||||||    
T  4195416 aaacttacttattttagtactttaaccaatgccccaagagcaatggttagcattctccatat 4195477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 34228316 - 34228400
Alignment:
Q  106 aaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    ||||||| ||| ||| |||||| || ||||| ||||| |||||| ||||||||||||| |||  ||||||||| || |||||||||    
T  34228316 aaataataatttcatcactttttat-aaaaagttactcgttttaattgcttaaccaataccttaagggcactgtttggcattctcc 34228400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 635763 - 635823
Alignment:
Q  106 aaataatgattgcattacttttcattaaaaacttacttgttttagttgcttaaccaatgcc 166  Q
    ||||||||||| ||  |||||||| ||||||||||  |||||| | |||||||||||||||    
T  635763 aaataatgattacacaacttttcaataaaaacttatatgttttggatgcttaaccaatgcc 635823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 37822744 - 37822676
Alignment:
Q  124 ttttcattaaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcca 192  Q
    |||| ||||||||||||| ||||||| ||| |||||||||| ||  || ||| | ||||||||||||||    
T  37822744 tttttattaaaaacttacatgttttaattgtttaaccaatgtctatagcgcattagttagcattctcca 37822676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 18100 - 18160
Alignment:
Q  131 taaaaacttacttgttttagttgcttaaccaatgcctccagggcactggttagcattctcc 191  Q
    |||||| ||||||||||| |||||||||||||||||   | || |||| ||||||||||||    
T  18100 taaaaagttacttgttttggttgcttaaccaatgccctgacggtactgtttagcattctcc 18160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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