View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13108_low_38 (Length: 235)

Name: NF13108_low_38
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13108_low_38
NF13108_low_38
[»] chr3 (10 HSPs)
chr3 (1-222)||(2760756-2760977)
chr3 (1-222)||(2820102-2820323)
chr3 (1-222)||(2808809-2809030)
chr3 (12-222)||(2854199-2854409)
chr3 (34-222)||(2770602-2770790)
chr3 (72-222)||(2750537-2750687)
chr3 (12-222)||(2791856-2792066)
chr3 (34-222)||(2798903-2799091)
chr3 (74-222)||(2837051-2837199)
chr3 (75-222)||(5414427-5414574)
[»] scaffold0691 (1 HSPs)
scaffold0691 (12-222)||(4538-4748)
[»] chr1 (1 HSPs)
chr1 (12-222)||(11116138-11116348)
[»] chr5 (1 HSPs)
chr5 (12-116)||(31681562-31681666)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2760977 - 2760756
Alignment:
Q  1 caagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760977 caagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctctt 2760878  T
Q  101 cttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagctttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2760877 cttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagctttt 2760778  T
Q  201 gtagggaagccatgtttttaat 222  Q
    ||||||||||||||||||||||    
T  2760777 gtagggaagccatgtttttaat 2760756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2820323 - 2820102
Alignment:
Q  1 caagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctctt 100  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||    
T  2820323 caagttaatggtttcatcctcaccaatggtagtgatattaagatcttcaaggtgtttcatttctactataacagcacttaaggcatccccatgttctctt 2820224  T
Q  101 cttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagctttt 200  Q
    ||||||||||||||||||||||| ||||||||  |||||||||||||||| | ||||||||| ||||||| ||| ||||| |||||||||||||| || |    
T  2820223 cttacatgccttaaacctaacctccttaactgctttaacattttcatctcgttaatgagatcgactcccctatgttttacatccacataataaagtttct 2820124  T
Q  201 gtagggaagccatgtttttaat 222  Q
    | |  |||||||||||||||||    
T  2820123 gcaatgaagccatgtttttaat 2820102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2809030 - 2808809
Alignment:
Q  1 caagttaatgctttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctctt 100  Q
    |||||||||  ||||||| ||||| ||||||||||||||||||| |||||||||||||| |||||||||  |||||| || ||| | |||||| ||||||    
T  2809030 caagttaattgtttcatcttcacctattgtagtgatattaagattttcaaggtgtttcatttctactattgcagcacataaggcattcccatgttctctt 2808931  T
Q  101 cttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagctttt 200  Q
    || |||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||    
T  2808930 ctcacatgccttaaacctaacctccttaactgccctaacattttcatctcttgaatgagatctacccccccatgatctacctccacataataaaggtttt 2808831  T
Q  201 gtagggaagccatgtttttaat 222  Q
    | ||||||| || |||||||||    
T  2808830 gaagggaagtcaagtttttaat 2808809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 2854199 - 2854409
Alignment:
Q  12 tttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgcct 111  Q
    ||||||||||  | |||| ||||||||||||   ||||||||||| ||  ||| |||   |||||||||||||||||||||| |||||||||||||||||    
T  2854199 tttcatcctctgctattgcagtgatattaagtgattcaaggtgttgcatctcttctactgcagcacttatggcctccccatgttctcttcttacatgcct 2854298  T
Q  112 taaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagcc 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||  |||||||||||||| || ||||| ||||||| |    
T  2854299 taaacctaaccttcttaactgccttaacattttcatctcttgaatgagatctacccccccatgatcgacctccacataatataggttttgaagggaagtc 2854398  T
Q  212 atgtttttaat 222  Q
    | |||||||||    
T  2854399 aagtttttaat 2854409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 2770790 - 2770602
Alignment:
Q  34 gatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactga 133  Q
    ||||||||||| |||||||||||||| |||| |||   |||||| || ||| | |||||| |||| ||||||  ||||||| |||||||| ||||||||     
T  2770790 gatattaagatgttcaaggtgtttcatttctgctactgcagcacataaggcgttcccatgttctcgtcttactcgccttaagcctaacctccttaactgc 2770691  T
Q  134 cttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagccatgtttttaat 222  Q
    |||| |||||||||||||||||||||||  || |||||||||| ||||||||||| |||||| ||||||||||||| ||||||||||||    
T  2770690 cttagcattttcatctcttgaatgagatatacgcccccatgatctacctccacatcataaagattttgtagggaagtcatgtttttaat 2770602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 2750687 - 2750537
Alignment:
Q  72 cagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactccccc 171  Q
    ||||||||||||| | |||||| || |||||||||||| ||||||||||| | |||||||| |||| |||||||||||||| ||||||||| ||||||||    
T  2750687 cagcacttatggcattcccatgttcccttcttacatgctttaaacctaacttccttaactgccttagcattttcatctcttcaatgagatctactccccc 2750588  T
Q  172 atgatttacctccacataataaagcttttgtagggaagccatgtttttaat 222  Q
    ||||| |||||||||||||||||| |||| |||||||  ||||||||||||    
T  2750587 atgatctacctccacataataaaggttttttagggaaatcatgtttttaat 2750537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 2792066 - 2791856
Alignment:
Q  12 tttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgcct 111  Q
    |||||||||||   |||| || ||||||||||| |||||||||||||| |||| |||   |||||| || ||| | |||||| |||| |||||| || ||    
T  2792066 tttcatcctcagatattgcagagatattaagatattcaaggtgtttcatttctgctactgcagcacataaggcattcccatgttctcgtcttacttgact 2791967  T
Q  112 taaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagcc 211  Q
    ||| |||||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||| | |||||| ||||| ||||||| |    
T  2791966 taagcctaacctccttaactgccttagcattttcatctcttgaatgagatctactcccccatgatctacctccacgtgataaaggttttgaagggaagtc 2791867  T
Q  212 atgtttttaat 222  Q
    | | |||||||    
T  2791866 aagattttaat 2791856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 222
Target Start/End: Complemental strand, 2799091 - 2798903
Alignment:
Q  34 gatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactga 133  Q
    |||||| |||| |||||||||| ||| |||| ||| | ||||||||| ||  | |||||| |||| ||| ||||||||||||||| | || ||||| |      
T  2799091 gatattcagattttcaaggtgtgtcatttctgctacagcagcacttaaggaattcccatgttctcctctgacatgccttaaacctgaactccttaaattc 2798992  T
Q  134 cttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagccatgtttttaat 222  Q
    |||| ||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||  || |||||||||    
T  2798991 cttagcattttcatttcttgaatgagatcaacccctccatgatctacctccacataataaagattttgtagggaaatcaagtttttaat 2798903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 2837051 - 2837199
Alignment:
Q  74 gcacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccat 173  Q
    ||||||| ||| | |||||| |||||| |||||||||||||||||||| | | ||| || |||||||||| |||||||| ||| ||||| ||||||||||    
T  2837051 gcacttaaggcattcccatgttctctttttacatgccttaaacctaacttccataattgccttaacatttccatctcttcaataagatctactcccccat 2837150  T
Q  174 gatttacctccacataataaagcttttgtagggaagccatgtttttaat 222  Q
    ||| ||||||||||||| |||| ||||| ||||||| || |||||||||    
T  2837151 gatctacctccacataacaaagtttttgaagggaagtcaagtttttaat 2837199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 5414574 - 5414427
Alignment:
Q  75 cacttatggcctccccatgctctcttcttacatgccttaaacctaaccttcttaactgacttaa-cattttcatctcttgaatgagatcaactcccccat 173  Q
    |||||||||| | ||| || ||||||||||||||| ||||||| ||| | |||||||| ||||| ||| |||||||||| ||||||||| ||||||||||    
T  5414574 cacttatggcattcccgtgttctcttcttacatgctttaaacccaacttccttaactg-cttaagcatcttcatctcttcaatgagatccactcccccat 5414476  T
Q  174 gatttacctccacataataaagcttttgtagggaagccatgtttttaat 222  Q
    ||| ||||| |||||||||||  ||||||||||||| ||||||||||||    
T  5414475 gatctacctgcacataataaaaattttgtagggaagtcatgtttttaat 5414427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 4538 - 4748
Alignment:
Q  12 tttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgcct 111  Q
    ||||||||||  | |||| ||||||||||||   ||||||||||| ||  |||||||   | ||||||| ||| |  | ||| |||||||||||||||||    
T  4538 tttcatcctctgctattgcagtgatattaagtgattcaaggtgttgcatctctactaatgccgcacttaaggcatggctatgttctcttcttacatgcct 4637  T
Q  112 taaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagcc 211  Q
    |||||||||| | |||||||| ||||  ||||||||||||| ||||||||| ||||||||||||| || ||| |||||| |||  ||||||||||||| |    
T  4638 taaacctaacttccttaactgccttagtattttcatctcttcaatgagatctactcccccatgatctagctcgacataacaaatattttgtagggaagtc 4737  T
Q  212 atgtttttaat 222  Q
    | |||||||||    
T  4738 aagtttttaat 4748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 11116138 - 11116348
Alignment:
Q  12 tttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgcct 111  Q
    ||||||||||  |||||| ||||||||||||   ||||||||||| ||  ||| ||||  |||||||||  || | | || | |||||| | ||| ||||    
T  11116138 tttcatcctctgcaattgcagtgatattaagtgattcaaggtgttgcatctcttctattgcagcacttaatgcattcacaagttctcttttcacacgcct 11116237  T
Q  112 taaacctaaccttcttaactgacttaacattttcatctcttgaatgagatcaactcccccatgatttacctccacataataaagcttttgtagggaagcc 211  Q
    |||||||||| |||||||||| |||||||||||||||||||  || ||||| ||||||||||||| ||||||||||||| | |  ||||| ||||||| |    
T  11116238 taaacctaactttcttaactgccttaacattttcatctcttctataagatctactcccccatgatctacctccacataacacatattttgaagggaagtc 11116337  T
Q  212 atgtttttaat 222  Q
    | |||||||||    
T  11116338 aagtttttaat 11116348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 31681666 - 31681562
Alignment:
Q  12 tttcatcctcaccaattgtagtgatattaagatcttcaaggtgtttcaattctactataacagcacttatggcctccccatgctctcttcttacatgcct 111  Q
    ||||||| ||| | |||| |||||||||||||| |||||||||||||  |||||| ||  | |||| || ||| | ||| || |||||||||||||||||    
T  31681666 tttcatcttcaactattgcagtgatattaagattttcaaggtgtttcgtttctacgattgctgcacatacggcattcccgtgttctcttcttacatgcct 31681567  T
Q  112 taaac 116  Q
    |||||    
T  31681566 taaac 31681562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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