View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_39 (Length: 235)
Name: NF13108_low_39
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 43633148 - 43633366
Alignment:
| Q |
1 |
cccgtgaaaaatgttgtcnnnnnnngatttggtgttgttgggttttaattggattattcatagcttaaacaaatgaatgcatgaatgtataggtaatggg |
100 |
Q |
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| T |
43633148 |
cccgtgaaaaatgttgtctttttttgatttggtgttgttgggttttaattggattattcatagcttaaacaaatgaatgtatgaatgtataggtaatggg |
43633247 |
T |
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| Q |
101 |
gaaaggccatggaaaaattcagatgctagacttgtgctggaagatggttcaatttggaaagctaaatcatttggtgcttcaggaacccaagttggtgaag |
200 |
Q |
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| T |
43633248 |
gaaaggccatggaaaaattcagatgctagacttttgctggaagatggttcaatttggaaagctaaatcatttggtgcttcaggaacccaagttggtgaag |
43633347 |
T |
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| Q |
201 |
ttgttttcaatacatcttt |
219 |
Q |
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| T |
43633348 |
ttgttttcaatacatcttt |
43633366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 216
Target Start/End: Original strand, 42961431 - 42961589
Alignment:
| Q |
58 |
tcatagcttaaacaaatgaatgcatgaatgtataggtaatggggaaaggccatggaaaaattcagatgctagacttgtgctggaagatggttcaatttgg |
157 |
Q |
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|||||||||| ||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42961431 |
tcatagcttacacaaacaaataaatgcatgtataggtaatggagaaaggccatggaaaaattcagatgctagacttgtgctagaagatggttcaatttgg |
42961530 |
T |
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| Q |
158 |
aaagctaaatcatttggtgcttcaggaacccaagttggtgaagttgttttcaatacatc |
216 |
Q |
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| T |
42961531 |
aaagctaaatcatttggtgcttcaggaacccaagttggtgaagttgttttcaatacatc |
42961589 |
T |
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