View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_4 (Length: 682)
Name: NF13108_low_4
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 612; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 18 - 671
Target Start/End: Original strand, 54720728 - 54721378
Alignment:
| Q |
18 |
accttaattttaaataattggaaaattgttgtgcattatatatagagtatgaaagcactgaaagagaatcgtcaacgacgacatagtgaagacaaatgca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54720728 |
accttaattttaaataattggaaaattgttgtgcattatatatagagtatgaaagcactgaaagagaatcgtcaacgacgacatagtgaagacaaatgga |
54720827 |
T |
|
| Q |
118 |
caatccaatgtctcaaaagtgtgatcaccctctattttcatctgttagccagtatttctatcatgtacctaattaatttctatttatacctcatgtaaca |
217 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54720828 |
caatccaatgtctcaaaagtgtgatcatcctatattttcatctgttagccagtatttctatcatgtacctaattaatttctatttatacctcatgtaaca |
54720927 |
T |
|
| Q |
218 |
attggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaa |
317 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54720928 |
atcggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaa |
54721027 |
T |
|
| Q |
318 |
agccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctattttattccatgcaaaacaataacgat |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721028 |
agccacattaattcatttattttttcgtttaaggataaatgtggtgttataaaatgaagtgatatgaagcctattttattccatgcaaaacaataacgat |
54721127 |
T |
|
| Q |
418 |
aggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaat |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721128 |
aggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaat |
54721227 |
T |
|
| Q |
518 |
ggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaa |
617 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| |
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| T |
54721228 |
ggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagttggtactctgaatagtgctgctgct---gagggtgatggaa |
54721324 |
T |
|
| Q |
618 |
gagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgatg |
671 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54721325 |
gagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgatg |
54721378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 223 - 671
Target Start/End: Original strand, 54714013 - 54714449
Alignment:
| Q |
223 |
ctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattactttctcacgcaaagcca |
322 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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|
| T |
54714013 |
ctggtcaattaattaaccatcatatttaacgccatgcatgcttcccacacggttaaactagcttagttttgtcaaaatattattttctcaagcaaagcca |
54714112 |
T |
|
| Q |
323 |
cattaattcatttattttttcgtttaaggataaatgtggtcttataaaatgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaa |
422 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714113 |
cattaattcacttattttttcgtttaaggaaaaatgttgtgttataaattgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaa |
54714212 |
T |
|
| Q |
423 |
ggaaataaagttactgatagatattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggcta |
522 |
Q |
| |
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| ||||||| |||||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| |||| |||||||| |
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| T |
54714213 |
gaaaataaaaatactgagtgatattgtacactatggcaaaaac---------ttcaattcttctagttgtccttgctgtggcattatttctcaatggcta |
54714303 |
T |
|
| Q |
523 |
tagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagtt |
622 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||||| |
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| T |
54714304 |
tagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtattctgaatag---tgctgctgccgggggtgatggaagagtt |
54714400 |
T |
|
| Q |
623 |
aatcaattactagtgaaaga---tgaagctgatcagcttcatgatgatgatg |
671 |
Q |
| |
|
||||| || |||||||| |||||||||||||| | |||||||||||| |
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|
| T |
54714401 |
aatca---accggtgaaagatattgaagctgatcagcatgatgatgatgatg |
54714449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 176 - 386
Target Start/End: Original strand, 54680248 - 54680457
Alignment:
| Q |
176 |
tatcatgtacctaattaatttctatttatacctcatgtaacaattggctggtccattaattaaccatcatatttaacgccatgcatgcttcccacacggt |
275 |
Q |
| |
|
||||||| | ||||||| ||||||||||| | | || ||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
54680248 |
tatcatgcaactaattagtttctatttattctttatataacaattggccggtcaattaattaaccatcatatttaacgccatgc----ttcccacacggt |
54680343 |
T |
|
| Q |
276 |
taaactagcttagttttgtcaaaatattact---ttctcacgcaaagccacattaattcatttattttttcgtttaaggataaatgtggtcttataaaat |
372 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||| | |
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| T |
54680344 |
taaactagcttacttttgtcaaaatattactaatttctcacgcaaagccacactaattcatttattttttcgtttatggaaaaatgtggtgttataaatt |
54680443 |
T |
|
| Q |
373 |
gaagtgatatgaag |
386 |
Q |
| |
|
||||||||| |||| |
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| T |
54680444 |
gaagtgataagaag |
54680457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 443 - 577
Target Start/End: Original strand, 54728077 - 54728205
Alignment:
| Q |
443 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
542 |
Q |
| |
|
|||||| |||||||| |||||| | ||||| |||||||||||| |||||||||| ||||||||| || ||||||||||||||| ||||| ||||| |
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| T |
54728077 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcatt-tttgtgaatggctatagtg---ttgctgcgggtg |
54728170 |
T |
|
| Q |
543 |
aagtaagagctaatcaactggtgaaagatgaagct |
577 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||| |
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|
| T |
54728171 |
tgggaagagataatcaactggagaaagatgaagct |
54728205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 54726646 - 54726731
Alignment:
| Q |
245 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
330 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| || |||| ||||| ||||||||| ||||| |||||||| |||||||||| |
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| T |
54726646 |
tatttgacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctaacgcaaagtcacattaatt |
54726731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 447 - 671
Target Start/End: Original strand, 5297310 - 5297531
Alignment:
| Q |
447 |
tgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5297310 |
tgtacactatggcaaaaaccagtactgtttcacttgttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
5297409 |
T |
|
| Q |
547 |
aagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagttaatcaattactagtgaaagatgaa |
646 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5297410 |
aagagctaatcaactggtgaaagatgaatctggtactctgaatagtgctgctgct---gagggtgatggaagagttaatcaattactagtgaaagatgaa |
5297506 |
T |
|
| Q |
647 |
gctgatcagcttcatgatgatgatg |
671 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
5297507 |
gctgatcagcttcatgatgatgatg |
5297531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 577
Target Start/End: Original strand, 5302739 - 5302868
Alignment:
| Q |
443 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
542 |
Q |
| |
|
|||||| |||||||| |||||| | ||||| |||||||||||| |||||||||| |||||||||| || ||||||||||||||| |||||| ||||| |
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| T |
5302739 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcattatttgtgaatggctatagtg---ctgctgtgggtg |
5302833 |
T |
|
| Q |
543 |
aagtaagagctaatcaactggtgaaagatgaagct |
577 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
5302834 |
tgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Original strand, 5302512 - 5302597
Alignment:
| Q |
245 |
tatttaacgccatgcatgcttcccacacggttaaac--tagcttagttttgtcaaaatattactttctcacgcaaagccacattaatt |
330 |
Q |
| |
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||||| || ||||||||||||||||||||||||||| || |||| ||||| ||||||||| |||||||||||||| |||||||||| |
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|
| T |
5302512 |
tattttacaccatgcatgcttcccacacggttaaactataccttaattttgacaaaatatt--tttctcacgcaaagtcacattaatt |
5302597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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