View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13108_low_8 (Length: 570)
Name: NF13108_low_8
Description: NF13108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13108_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 190 - 554
Target Start/End: Original strand, 1217439 - 1217803
Alignment:
| Q |
190 |
aagatcatagaagctaaaatacaaattgtctgatcatcttcatctaacagtcaataatgggcgactacaatattttgtgactcgagatctaatcttctat |
289 |
Q |
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| T |
1217439 |
aagatcatagaagctaaaatacaaattgtctgatcatcttcatctaacagtcaatgatgggcgactacaacattttgtaactcgagatctaatcttctat |
1217538 |
T |
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| Q |
290 |
gtgaaatttggaaaatgaatttcatgggatcatgcatttatgcagttgataatctaagcggttgatccttattggacatatatatttatcaaacttataa |
389 |
Q |
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| T |
1217539 |
gtgaaatttggaaaatgaatttcatgcggtcatgcatttatgcagttgataatctaaacggttgatccttattggacatatatatttatcaaatttataa |
1217638 |
T |
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| Q |
390 |
tgtaaagtgtctgatcttgatccaacgactttgaggtgtcaactatttgactgcatgattgtctaagtgtaagagtgggtcatgggacaaggaaagttgt |
489 |
Q |
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| T |
1217639 |
tgtaaagtgtctgatcttgatccaacgactctgaggtgtcaactatttgactgcatgattatctaagtgtaagagtgggtcatgggacaaggaaagttgt |
1217738 |
T |
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| Q |
490 |
gacatttgaagggtagttgagtcctattcattgatatctaagagggattaagaaaggccaataag |
554 |
Q |
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| T |
1217739 |
gacatttgaagggtagttgagtcttattcattgatatctaagagggcttaagaaaggccaataag |
1217803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 1216906 - 1217098
Alignment:
| Q |
13 |
aaggcatcaatcacatgtaattgcataaactaatttctcgagataactcagagttgtttaaatgatcgactatccatagttgaacatttgaccaaataat |
112 |
Q |
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| T |
1216906 |
aaggcatcaatcacatgtaattgcataaactaatttctcgagataacctagagttgtttaaatgatcgattatccatagttgaacatttgaccaaataat |
1217005 |
T |
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| Q |
113 |
tgacatactcagctatctaccatttgtgtcacataccatgttagtgacacttatgatttttaagttttattgtaaataagatcatagaagcta |
205 |
Q |
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| T |
1217006 |
tgacatactcagctatctaccatttgtgtcacataccatgttagtgacacttatgatttttaagttttattgtaaataagatcatagaagcta |
1217098 |
T |
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