View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_high_16 (Length: 455)
Name: NF13109_high_16
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_high_16 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 35052186 - 35052607
Alignment:
| Q |
20 |
aaaaataaggagttattgatgaggtagttgttcaagtagttgaatgaagagagttacatatccatatgttacttccagattatttttgatgatatgccaa |
119 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||| |
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| T |
35052186 |
aaaaataaggagttattgatgaggtagttgttcgagtagttgaatgaagagagttacatatccgtctgttacttccagattatctttgatgatatgccaa |
35052285 |
T |
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| Q |
120 |
agccccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaatcattttcataaaacctacactaaacaccgcgtgtttggagac |
219 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
35052286 |
agccctgtcgcttccaacactgcttctaaattctcacaactaaagaaaatgtggcaatcattttcatagaacctacactaaacactgcgtgtttggagac |
35052385 |
T |
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| Q |
220 |
aatactttgttggtaggcagccacacgccaccctccataagaaaaccttcaatttttgaggtacttatagatgccataattttgtacagctgccctccac |
319 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||| |
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| T |
35052386 |
aatactttgttggtaggcagccacacgccgccctccataagaaaaccttcaattttttgggtactttgagatcccataatttcgtacagctgccctccac |
35052485 |
T |
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| Q |
320 |
acgtaagttcgtgttatcgactaaattttccatgacgtgtcgatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtcc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35052486 |
acgtaagttcgtgttatcgactaaattttccatgacgtgtcgatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtcc |
35052585 |
T |
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| Q |
420 |
acttccacccccattgatgatg |
441 |
Q |
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| T |
35052586 |
acttccacccccattgatgatg |
35052607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 43381387 - 43381213
Alignment:
| Q |
20 |
aaaaataaggagttattgatgaggtagttgttcaagtagttgaatgaagagagttacatatccatatgttacttccagattatttttgatgatatgccaa |
119 |
Q |
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|||||||||||||| ||||||||| |||||||| | |||||||| |||||||||| || |||||| || |||| | ||||| | |||||||||||| || |
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| T |
43381387 |
aaaaataaggagttgttgatgaggaagttgttcgaatagttgaaagaagagagttgcaaatccatttgctactactagattctctttgatgatatgacac |
43381288 |
T |
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| Q |
120 |
agccccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaatcattttcataaaaccta |
194 |
Q |
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| T |
43381287 |
agccgcgccacttcccacacgacttctaacttgtcgcaaccaaagtaaacatgtcaatcatttttatacaaccta |
43381213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 376
Target Start/End: Complemental strand, 43381137 - 43381005
Alignment:
| Q |
246 |
gccaccctccataagaaaaccttcaatttttgag--gtacttatagatgccataattttgtacagctgccctccacacgtaagttcgtgttatcgactaa |
343 |
Q |
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| T |
43381137 |
gccaccttccatagggaaaccttcatttttttagtggtactttgagatgccataatttcgtccaattgccctctacacgtaagtccgcgttatcgactaa |
43381038 |
T |
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| Q |
344 |
attttccatgacgtgtcgatatgcggagctaac |
376 |
Q |
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| T |
43381037 |
atttttcatgatgtgttgacacgcgaagctaac |
43381005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 83 - 425
Target Start/End: Complemental strand, 30742 - 30378
Alignment:
| Q |
83 |
atatgttacttccagattatttttgatgatatgccaaagccccgtcgcttcccacactgcttctaaattctcacaactaaagaaaatgtggcaatcattt |
182 |
Q |
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| T |
30742 |
atatgatacttccagattctctttgatgatacgccacaactctattgcttcccacactgctgctaacttctcacaaccaaagaaaacatgccaatcattt |
30643 |
T |
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| Q |
183 |
tcataaaac-----------------ctacactaaacaccgcgtgtttggagacaatactttgttggtaggcagccacacgccaccctccataagaaaac |
265 |
Q |
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| T |
30642 |
tgatacgacatatcacacaatgatcactacactaaacaccacattttttaagacagtatcttgttggcagtcatcgacacgccacccttcataggaaaac |
30543 |
T |
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| Q |
266 |
cttca-atttttgaggtacttatagatgccataattttgtacagctgccctccacacgtaagttcgtgttatcgactaaattttccatga--cgt--gtc |
360 |
Q |
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||| | |||||| ||||| |||||||||| |||||| ||| || |||||||||||| | |||||||| |||||| ||||||||| ||| ||| |
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| T |
30542 |
cttaacttttttggtatactttgagatgccatagttttgtccagttgtcctccacacgtacatctgtgttatcaactaaactttccatgatgcgtacgtc |
30443 |
T |
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| Q |
361 |
gatatgcggagctaacattgtattcaccatggggtgtaaaattccgtagatgtttgtccacttcc |
425 |
Q |
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| T |
30442 |
gataaatggagctaacactatattcaccatggggtttaaaattccatacatgtttttcctcttcc |
30378 |
T |
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