View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_high_18 (Length: 386)
Name: NF13109_high_18
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_high_18 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 24143340 - 24143725
Alignment:
| Q |
1 |
tcatcaattcacctaaaattattttaacatcaatttcttgatttaaaacactaacgtgattatcaatatgcaagataacctctattcaccacatagctaa |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24143340 |
tcatcaattcacctaaaactattttaacatcaatttcttgatttaaaacactaatgtgattatcaatatgcaagataacctctattcaccacatagctaa |
24143439 |
T |
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| Q |
101 |
atcccttcaaataactatgagccccttcaaatccatgaaaatctccttacaaatctagtttctatgaaatgacattgtttttaacaaacaaaacaatttc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24143440 |
atcccttcaaataactatgaaccccttcaaatccatgaaaatctccttacaaatctagtttctatgaaatgacactgtttttaacaaacaaaacaatttc |
24143539 |
T |
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| Q |
201 |
ccgtgatggatttgtttgtgttatagaaaagttatccactcagctagtcttatctctataataattttgagacattagtgcatgttagaggcttgtccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24143540 |
ccgtgatggatttgtttgtgttatagaaaagttatccactcagctagtcttatctctataataattttgagacattagtgcatattagaggcttgtccaa |
24143639 |
T |
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| Q |
301 |
ataattagaaagaaacaaagattcatcatatattgtatctaattgacaaagatttgtcattttgataattgaccaggattaagcat |
386 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24143640 |
ataattagaaagaaacaaagactcatcatatattgtatctaattgacaaagatttgtcattttgataattgaccaggatcaagcat |
24143725 |
T |
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