View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_high_25 (Length: 356)

Name: NF13109_high_25
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_high_25
NF13109_high_25
[»] chr2 (17 HSPs)
chr2 (10-310)||(40728957-40729257)
chr2 (20-235)||(40447867-40448083)
chr2 (20-138)||(18292396-18292514)
chr2 (22-272)||(41339818-41340071)
chr2 (10-146)||(34397513-34397647)
chr2 (182-310)||(28266679-28266807)
chr2 (158-257)||(44789030-44789129)
chr2 (182-275)||(29271134-29271223)
chr2 (128-257)||(18292310-18292445)
chr2 (154-308)||(12773965-12774125)
chr2 (128-239)||(34397457-34397570)
chr2 (42-146)||(28266806-28266910)
chr2 (51-95)||(12774137-12774181)
chr2 (154-235)||(35670394-35670476)
chr2 (52-93)||(44789002-44789043)
chr2 (51-90)||(35670502-35670541)
chr2 (160-237)||(36731833-36731911)
[»] chr7 (20 HSPs)
chr7 (20-310)||(40106196-40106489)
chr7 (20-235)||(10288395-10288611)
chr7 (25-201)||(15873614-15873790)
chr7 (128-310)||(12911259-12911444)
chr7 (20-146)||(12196390-12196516)
chr7 (120-257)||(49169923-49170061)
chr7 (10-146)||(12911387-12911523)
chr7 (25-155)||(11036031-11036162)
chr7 (10-119)||(49170022-49170133)
chr7 (182-306)||(3691887-3692011)
chr7 (128-226)||(12196347-12196447)
chr7 (154-235)||(18366934-18367016)
chr7 (154-235)||(48653450-48653532)
chr7 (154-235)||(22078147-22078229)
chr7 (25-93)||(22078066-22078135)
chr7 (210-270)||(24056824-24056884)
chr7 (154-196)||(21491140-21491182)
chr7 (51-90)||(48653547-48653586)
chr7 (200-257)||(13163859-13163916)
chr7 (42-93)||(21491194-21491247)
[»] chr5 (16 HSPs)
chr5 (20-248)||(40691261-40691489)
chr5 (10-310)||(38001359-38001658)
chr5 (25-235)||(537211-537422)
chr5 (131-310)||(30910256-30910437)
chr5 (20-146)||(30910185-30910310)
chr5 (158-257)||(6309214-6309313)
chr5 (154-257)||(4557588-4557692)
chr5 (154-202)||(25101567-25101615)
chr5 (154-202)||(25160660-25160708)
chr5 (52-90)||(6309186-6309224)
chr5 (51-93)||(25101627-25101669)
chr5 (51-93)||(25160720-25160762)
chr5 (51-88)||(42861832-42861869)
chr5 (158-190)||(25101608-25101640)
chr5 (158-190)||(25160701-25160733)
chr5 (110-146)||(27026870-27026906)
[»] chr4 (17 HSPs)
chr4 (10-257)||(28968822-28969074)
chr4 (80-245)||(55162638-55162803)
chr4 (25-235)||(40459342-40459553)
chr4 (9-166)||(55162529-55162684)
chr4 (21-166)||(13652921-13653066)
chr4 (21-166)||(13661046-13661191)
chr4 (158-221)||(69810-69873)
chr4 (51-98)||(2761802-2761849)
chr4 (154-235)||(49499574-49499656)
chr4 (52-93)||(69782-69823)
chr4 (195-274)||(41869209-41869287)
chr4 (128-181)||(55162609-55162661)
chr4 (154-235)||(2761713-2761795)
chr4 (92-134)||(13653032-13653074)
chr4 (92-134)||(13661157-13661199)
chr4 (42-93)||(49499509-49499562)
chr4 (158-190)||(49499549-49499581)
[»] chr1 (19 HSPs)
chr1 (9-257)||(8421937-8422180)
chr1 (20-235)||(43406971-43407187)
chr1 (21-282)||(33007207-33007470)
chr1 (25-232)||(37666785-37666993)
chr1 (20-235)||(338494-338710)
chr1 (158-308)||(19198324-19198474)
chr1 (182-310)||(16075252-16075380)
chr1 (10-157)||(9537070-9537221)
chr1 (89-239)||(9536947-9537099)
chr1 (21-146)||(16075129-16075253)
chr1 (21-140)||(25921875-25921992)
chr1 (158-235)||(6836422-6836500)
chr1 (154-235)||(18472541-18472623)
chr1 (51-93)||(18472635-18472677)
chr1 (154-235)||(35761657-35761739)
chr1 (52-93)||(6836394-6836435)
chr1 (25-93)||(35761751-35761820)
chr1 (51-98)||(28561834-28561883)
chr1 (158-190)||(35761732-35761764)
[»] scaffold1838 (1 HSPs)
scaffold1838 (10-310)||(562-866)
[»] chr3 (13 HSPs)
chr3 (20-235)||(7336298-7336514)
chr3 (41-235)||(16975727-16975922)
chr3 (25-166)||(5004394-5004535)
chr3 (52-257)||(43277627-43277834)
chr3 (25-201)||(46404240-46404416)
chr3 (154-257)||(17542288-17542391)
chr3 (158-274)||(9104627-9104744)
chr3 (170-235)||(11937493-11937559)
chr3 (42-93)||(9104588-9104640)
chr3 (52-93)||(17542403-17542444)
chr3 (42-97)||(8731213-8731269)
chr3 (42-97)||(9083100-9083156)
chr3 (158-190)||(17542384-17542416)
[»] chr6 (10 HSPs)
chr6 (25-235)||(10751164-10751375)
chr6 (25-181)||(23260273-23260430)
chr6 (25-235)||(34636578-34636789)
chr6 (154-257)||(26182283-26182386)
chr6 (154-235)||(32449870-32449952)
chr6 (157-234)||(13773037-13773115)
chr6 (51-93)||(13773130-13773172)
chr6 (25-93)||(32449964-32450033)
chr6 (260-308)||(24164418-24164466)
chr6 (158-190)||(32449945-32449977)
[»] scaffold0013 (2 HSPs)
scaffold0013 (154-310)||(242574-242730)
scaffold0013 (52-93)||(242742-242783)
[»] chr8 (13 HSPs)
chr8 (128-310)||(41957985-41958173)
chr8 (26-138)||(41958124-41958236)
chr8 (154-257)||(22815908-22816011)
chr8 (162-257)||(44436630-44436725)
chr8 (10-93)||(44436498-44436581)
chr8 (51-93)||(22635730-22635772)
chr8 (154-307)||(40841053-40841212)
chr8 (52-93)||(22816023-22816064)
chr8 (42-93)||(40841224-40841276)
chr8 (154-216)||(22635627-22635689)
chr8 (160-216)||(3189092-3189148)
chr8 (51-91)||(3189139-3189179)
chr8 (153-185)||(44436592-44436624)
[»] scaffold0041 (2 HSPs)
scaffold0041 (157-235)||(32936-33016)
scaffold0041 (53-142)||(32991-33078)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 310
Target Start/End: Complemental strand, 40729257 - 40728957
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgc 109  Q
    |||||| || |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  40729257 attatattctgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggtggaaattgc 40729158  T
Q  110 aattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaa 209  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||     
T  40729157 aattatattctgcgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgtctgtgtggcaggttatatccggatcatatagttataagag 40729058  T
Q  210 catgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttact 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  40729057 catgcatcttacgcataattgcattgagtcggttgtatatttgtgattttgtaattgattaaactagtataatgcaaatgaaatatgtgtgaactttact 40728958  T
Q  310 t 310  Q
    |    
T  40728957 t 40728957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 40447867 - 40448083
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||     
T  40447867 gtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattc 40447966  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatct 218  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||| ||||||| |    
T  40447967 tctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtacctaagagcatgcattt 40448066  T
Q  219 tacgcataattgcattg 235  Q
    ||| ||| |||||||||    
T  40448067 tacacatcattgcattg 40448083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 18292514 - 18292396
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  18292514 gtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattc 18292415  T
Q  120 tgtgtggatgccttagtgg 138  Q
    |||||||||||||||||||    
T  18292414 tgtgtggatgccttagtgg 18292396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 22 - 272
Target Start/End: Complemental strand, 41340071 - 41339818
Alignment:
Q  22 gtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatg 121  Q
    |||||||||||||| ||| ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| |     
T  41340071 gtggtgccttagtggcgggttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctc 41339972  T
Q  122 tgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagt-tataagaacatgcatc 217  Q
    |||||||||||||||||||| |||||||| |||| |||| || || |||||  ||||||||  ||||||| ||||||| |||| | ||||| |||||||     
T  41339971 tgtggatgccttagtggcggaaattgcaattata-ttctttgcggatgccttagtggcgggcattatatccggatcatgtagtatctaagagcatgcatt 41339873  T
Q  218 ttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaa 272  Q
    |||| ||| ||||||||| ||| ||| || || ||||  || |||| ||||||||    
T  41339872 ttacacatcattgcattgggtctgttatacatctgtgtgttgataagtgattaaa 41339818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 34397647 - 34397513
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgc 109  Q
    |||||| || |||||||||||||||| ||| ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| | ||||||||    
T  34397647 attatattctgtgtggtgccttagtggcgggttttagtctgcatt--catgatcatgcatggtatatgcatctgtgtggtgccttagtggcagaaattgc 34397550  T
Q  110 aattatattatgtgtggatgccttagtggcgggaatt 146  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  34397549 aattatattctgtgtggatgtcttagtggcgggaatt 34397513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 28266807 - 28266679
Alignment:
Q  182 ttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataa 281  Q
    ||||||| ||||||||||||||||||| |||||||| |  ||||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||    
T  28266807 ttatatccggatcatatagttataagagcatgcatcctctgcataattgcatttagtcagttgtatatttgtgattttataattgattaaaatattataa 28266708  T
Q  282 tgtaaatgaaatatgtgtgaactttactt 310  Q
    || ||||||||| ||||||||||||||||    
T  28266707 tgcaaatgaaatgtgtgtgaactttactt 28266679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 44789030 - 44789129
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||  |||||||    
T  44789030 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagttatacgagcatgcatcttacgcataattgcattgagtttgttgtatacatgtgatt 44789129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 275
Target Start/End: Original strand, 29271134 - 29271223
Alignment:
Q  182 ttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaacta 275  Q
    ||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  29271134 ttatatccggatcatatagttataagagcaaacatcttacgcataattgcattgagtcggttg----tttgtgattttataattgattaaacta 29271223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 18292445 - 18292310
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg------ttatatctggatcatatagttataagaacatgcatctta 220  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||  ||||  ||      ||||||||||||||||||||||||||| |||||||||||    
T  18292445 tgccttagtggcgggaattgcaattatatt-ctgtgtggatgccttagtggaaggcaggaattatatctggatcatatagttataagagcatgcatctta 18292347  T
Q  221 cgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    |||||||||| |||||||| ||||||||  |||||||    
T  18292346 cgcataattgtattgagtctgttgtatacatgtgatt 18292310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 308
Target Start/End: Complemental strand, 12774125 - 12773965
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcata-----attgcattgagtcggttgtat 247  Q
    ||||| |||||||||| |||||||||||||||||||||||||| |||| | ||||| ||||||| |||| ||||     ||||||||||||| ||| |      
T  12774125 tatttttgtgtggtgcatgtgtggcgggttatatctggatcatgtagtatttaagagcatgcattttacacataatcgcattgcattgagtctgttatgc 12774026  T
Q  248 atttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttac 308  Q
    |||||||  || |||| ||||||||||| ||||||  ||| ||||| ||||||||||||||    
T  12774025 atttgtgtgttgataagtgattaaactattataatacaaaggaaatgtgtgtgaactttac 12773965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 128 - 239
Target Start/End: Complemental strand, 34397570 - 34397457
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatcttacgca 224  Q
    |||||||||||| | |||||||| |||||| |||||||| || ||  ||||||||  ||||||  ||||||||||||||||||| |||||||||||||||    
T  34397570 tgccttagtggcagaaattgcaattatatt-ctgtgtggatgtcttagtggcgggaattatattcggatcatatagttataagagcatgcatcttacgca 34397472  T
Q  225 taattgcattgagtc 239  Q
    |||||||||||||||    
T  34397471 taattgcattgagtc 34397457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 28266910 - 28266806
Alignment:
Q  42 tttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgg-tgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcg 140  Q
    |||||||| |||||| ||||||||||||||||||||||||| ||||| || ||||||| |||  ||| |||||||||| | |||||||| ||||||||||    
T  28266910 tttagtcttcattttaatgatcatgcatggcatatgcatctatgtggatgtcttagtggcgg-gattacaattatattctatgtggatgtcttagtggcg 28266812  T
Q  141 ggaatt 146  Q
    ||||||    
T  28266811 ggaatt 28266806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 12774181 - 12774137
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcctta 95  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  12774181 cattttcatgatcatgcatcgcatatgcatctgtgtggtgcctta 12774137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 35670476 - 35670394
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    ||||| |||||| ||||||||||||| ||||||| |||||||| |||| | ||||| ||||||| |||| |||||||||||||    
T  35670476 tatttatgtgtgatgcctgtgtggcgagttatatttggatcatgtagtatttaagagcatgcattttacacataattgcattg 35670394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 44789002 - 44789043
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  44789002 attttcatgatcatgcaaggcatatgcatctgtgtggtgcct 44789043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 35670541 - 35670502
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtg 90  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  35670541 cattttcatgatcatgcatagcatatgcatctgtgtggtg 35670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 36731911 - 36731833
Alignment:
Q  160 tgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattgag 237  Q
    |||||| |||||||||| ||||||||||||||||||| |||| | ||||| ||||||| |||| ||  |||||||||||    
T  36731911 tgtgtgctgcctgtgtgacgggttatatctggatcatgtagtatttaagagcatgcattttacacagcattgcattgag 36731833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 20 - 310
Target Start/End: Original strand, 40106196 - 40106489
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||     
T  40106196 gtgtggtgccttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattatattc 40106295  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcat 216  Q
    |||||||||||||||||||| |||||||||| |||| ||||||||||  ||||  ||||||||  ||||||| | ||||||||||||||||| |||| ||    
T  40106296 tgtgtggatgccttagtggcaggaattgcaattata-ttctgtgtggaagccttagtggcgggaattatatccgaatcatatagttataagagcatgtat 40106394  T
Q  217 cttacgcataattgcattgagtcggttgtatatttgtgattttataattga-ttaaactagtataatgtaaatgaaatatgtgtgaactttactt 310  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||||||||||||    
T  40106395 cttacgcataattgcattgcgtcggttggatatttgtgattttataattgatttaaactattataatgcaaatgaaatgtgtgtgaactttactt 40106489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 10288611 - 10288395
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  10288611 gtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattc 10288512  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatct 218  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| |    
T  10288511 tctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattt 10288412  T
Q  219 tacgcataattgcattg 235  Q
    ||| ||| |||||||||    
T  10288411 tacacatcattgcattg 10288395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 15873790 - 15873614
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| | |||    
T  15873790 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 15873691  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt 201  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||| ||||||| ||||    
T  15873690 ggatgccttagtggcgggaattgcaattatatttccgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 15873614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 128 - 310
Target Start/End: Complemental strand, 12911444 - 12911259
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagtt-ataagaacatgcatcttacgc 223  Q
    |||||||||||  |||||||||| |||||| |||||||| || ||  || |||||  |||||| |||||||||||||| |||||| ||||||||||||||    
T  12911444 tgccttagtggtaggaattgcaattatatt-ctgtgtggatgtcttagtagcgggaattatatatggatcatatagtttataagagcatgcatcttacgc 12911346  T
Q  224 ataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttactt 310  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||    
T  12911345 ataattccattgagtcggttgtatatttgtgattttataattgattaaactattataatgcaaatgaaatatgtgcgaaccttactt 12911259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 146
Target Start/End: Complemental strand, 12196516 - 12196390
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |||||||||||||||     
T  12196516 gtgtggtgccttagtggcggactttagtctgcattttcatgatcatacatggcatattcatctgtgtggtgccttagtggcgggaattgcaattatattc 12196417  T
Q  120 tgtgtggatgccttagtggcgggaatt 146  Q
    |||||||||||||||||| ||||||||    
T  12196416 tgtgtggatgccttagtgacgggaatt 12196390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 257
Target Start/End: Complemental strand, 49170061 - 49169923
Alignment:
Q  120 tgtgtggatgccttagtggc-gggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatct 218  Q
    |||||||||||||||||||| ||||||||||| ||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||    
T  49170061 tgtgtggatgccttagtggccgggaattgcaattatattaatgtgtggtgcttgtgtggcgggttatatccggatcatatagttataagagcatgcatct 49169962  T
Q  219 tacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    || |||||||||||||||||  ||||||||  |||||||    
T  49169961 tatgcataattgcattgagtgtgttgtatacatgtgatt 49169923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 146
Target Start/End: Complemental strand, 12911523 - 12911387
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgc 109  Q
    |||||| || ||||||| |||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||   | ||||||    
T  12911523 attatattctgtgtggtaccttagtggcgggttttagtctgcattttcataatcatgtatggcatatgcatctgtgtggtgccttagtggtaggaattgc 12911424  T
Q  110 aattatattatgtgtggatgccttagtggcgggaatt 146  Q
    ||||||||| |||||||||| |||||| |||||||||    
T  12911423 aattatattctgtgtggatgtcttagtagcgggaatt 12911387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 11036162 - 11036031
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtg 123  Q
    |||||| |||| |||  |||||||| |||||||||||||||||||  |||||||||||| ||||||||||||||| ||| ||||||||||||||| ||||    
T  11036162 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcgggaattgcaattatattctgtg 11036063  T
Q  124 tggatgccttagtggcgggaattgcaaatata 155  Q
    ||||||||||||||||||||||||||| ||||    
T  11036062 tggatgccttagtggcgggaattgcaattata 11036031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 49170133 - 49170022
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgg-tgccttagt-gacggaaatt 107  Q
    |||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||    
T  49170133 attatattctgtgtggtgtcttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggatgccttagtggccgggaatt 49170034  T
Q  108 gcaattatatta 119  Q
    ||||||||||||    
T  49170033 gcaattatatta 49170022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 306
Target Start/End: Original strand, 3691887 - 3692011
Alignment:
Q  182 ttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataa 281  Q
    |||||||| |||||||||||||||||| ||||||||||||  |||||||||||||||  ||| | ||| |||||||| |||||||||||||||| ||||     
T  3691887 ttatatcttgatcatatagttataagagcatgcatcttacatataattgcattgagtttgttatttatctgtgatttcataattgattaaactattatat 3691986  T
Q  282 tgtaaatgaaatatgtgtgaacttt 306  Q
    || ||| ||||| ||| ||||||||    
T  3691987 tgcaaaggaaatgtgtctgaacttt 3692011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 226
Target Start/End: Complemental strand, 12196447 - 12196347
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatcttacgca 224  Q
    ||||||||||||||||||||||| |||||| |||||||| |||||  ||| ||||  ||||||| ||||||||||||||||||| |||||||||||||||    
T  12196447 tgccttagtggcgggaattgcaattatatt-ctgtgtggatgccttagtgacgggaattatatccggatcatatagttataagagcatgcatcttacgca 12196349  T
Q  225 ta 226  Q
    ||    
T  12196348 ta 12196347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 18367016 - 18366934
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatag-ttataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |||  | ||||| ||||||| |||| |||||||||||||    
T  18367016 tatttctgtgtggtgcatgtgtggcgggttatatccggatcatgtagaatctaagagcatgcattttacacataattgcattg 18366934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 48653532 - 48653450
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||| |||||||||||||||||||||||| ||||||| |||| | ||||| | ||||| |||| |||||||||||||    
T  48653532 tatttctgtgcggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcttgcattttacacataattgcattg 48653450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 22078147 - 22078229
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||| | ||||| |||| || |||| ||| |||||||||    
T  22078147 tatttatgtgtggtgcctgtgtggcgggatatatccggatcatatagtatttaagagcatgtattttacacatcattgcattg 22078229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Original strand, 22078066 - 22078135
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcct 93  Q
    |||||| |||| |||  |||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  22078066 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 22078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 24056884 - 24056824
Alignment:
Q  210 catgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgatta 270  Q
    |||||||||||| ||||||||||||||||| ||| |||||| ||||||| |||| ||||||    
T  24056884 catgcatcttacacataattgcattgagtctgttttatattggtgatttgataactgatta 24056824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 21491182 - 21491140
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcat 196  Q
    |||||||||||||||||||||||||||||||| || |||||||    
T  21491182 tatttctgtgtggtgcctgtgtggcgggttatttccggatcat 21491140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 48653586 - 48653547
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtg 90  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  48653586 cattttcatgatcatgcataacatatgcatctgtgtggtg 48653547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 13163916 - 13163859
Alignment:
Q  200 gttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    ||||||||| ||||||||||| |||||||||| |||| || ||||||||  |||||||    
T  13163916 gttataagagcatgcatcttatgcataattgctttgaatctgttgtatacatgtgatt 13163859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 21491247 - 21491194
Alignment:
Q  42 tttagtctgcatt-ttcatgatcatgcatg-gcatatgcatctgtgtggtgcct 93  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||||||    
T  21491247 tttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcct 21491194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 248
Target Start/End: Original strand, 40691261 - 40691489
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||     
T  40691261 gtgtggtgccttagtgacgggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggtgccttattggcggaaattgcaattatattc 40691360  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatctt 219  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |  |||||||| ||||||||||||||||||| ||||||||||    
T  40691361 tgtgtggatgccttagtggcgggaattacaattatatttctgtgtggtgcctgtgtgacatgttatatccggatcatatagttataagagcatgcatctt 40691460  T
Q  220 acgcataattgcattgagtcggttgtata 248  Q
    |||||||||||||||||||| ||||||||    
T  40691461 acgcataattgcattgagtctgttgtata 40691489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 38001359 - 38001658
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgc 109  Q
    |||||| || |||||||| ||||||| ||| ||||| |||||||||||||||||  ||||| ||||||||||||||||||| || |||| ||| ||||||    
T  38001359 attatattctgtgtggtgtcttagtggcgggttttaatctgcattttcatgatc--gcatgacatatgcatctgtgtggtgtct-agtggcgggaattgc 38001455  T
Q  110 aattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataa 206  Q
    ||||||||  ||||||||||| ||||||||||||||||||| |||||| |||||||| |||||  |||| |||  ||||||| |||||||||||||||||    
T  38001456 aattatatcttgtgtggatgcattagtggcgggaattgcaattatatt-ctgtgtggatgccttggtggtgggaattatatccggatcatatagttataa 38001554  T
Q  207 gaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaacttt 306  Q
    || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38001555 gagcatgcatcttacgcataattgcattgagtcggttgtttatttgtgattttataattgattaaactagtataatgcaaatgaaatatgtgtgaacttt 38001654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 537211 - 537422
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| | |||    
T  537211 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 537310  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgc 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||| ||||||| || | |    
T  537311 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatataagagcatgcattttgcac 537410  T
Q  224 ataattgcattg 235  Q
    || |||||||||    
T  537411 atcattgcattg 537422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 131 - 310
Target Start/End: Original strand, 30910256 - 30910437
Alignment:
Q  131 cttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatcttacgcataa 227  Q
    |||||| ||||||||||||| |||||| |||||||| |||||  ||| ||||  ||||||| | || |||||||||||||| ||||||||||||||||||    
T  30910256 cttagtagcgggaattgcaattatatt-ctgtgtggatgccttagtgtcgggaattatatccgtattatatagttataagagcatgcatcttacgcataa 30910354  T
Q  228 ttgcattgagtcggttgtatatttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttactt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  30910355 ttgcattgagtcggttgtatatttgtgattttataattgattaaactattataatgtaaatgaaatatgcgtgaactttactt 30910437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 30910185 - 30910310
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||  ||||||  ||| |||||||||||||||     
T  30910185 gtgtggtgccttagtggcggattt-agtctgcatttccatgatcatgcatggcatatgcatctgtgtggtctcttagtagcgggaattgcaattatattc 30910283  T
Q  120 tgtgtggatgccttagtggcgggaatt 146  Q
    |||||||||||||||||| ||||||||    
T  30910284 tgtgtggatgccttagtgtcgggaatt 30910310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 6309214 - 6309313
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| |||||||    
T  6309214 tctgtgtggtgtctgtgtggcgggttatatccggatcatatagttataagagcatgcatcttacgcataagtgcattgagtctgttgtatatatgtgatt 6309313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 4557692 - 4557588
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatag-ttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttg 252  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||  | ||||| |||||||||||||||||||||||||||||  ||||||||  ||    
T  4557692 tatttctgtgtggtgcctgtgtggcgggttatatctggaccatgtagaatctaagagcatgcatcttacgcataattgcattgagtttgttgtatacatg 4557593  T
Q  253 tgatt 257  Q
    |||||    
T  4557592 tgatt 4557588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 25101615 - 25101567
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagtt 202  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  25101615 tatttctgtgtggtgcctgtgtgacgggttatatccggatcatatagtt 25101567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 25160708 - 25160660
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagtt 202  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  25160708 tatttctgtgtggtgcctgtgtgacgggttatatccggatcatatagtt 25160660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 6309186 - 6309224
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtg 90  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6309186 attttcatgatcatgcatggcatatgcatctgtgtggtg 6309224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 25101669 - 25101627
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25101669 cattttcatgatcatgcatggtatatgcatctgtgtggtgcct 25101627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 25160762 - 25160720
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  25160762 cattttcatgatcatgcatggtatatgcatctgtgtggtgcct 25160720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 42861832 - 42861869
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtgg 88  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  42861832 cattttcatgatcatgcatagcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 25101640 - 25101608
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  25101640 tctgtgtggtgcctgtgtggcgggttatttctg 25101608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 25160733 - 25160701
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  25160733 tctgtgtggtgcctgtgtggcgggttatttctg 25160701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 27026870 - 27026906
Alignment:
Q  110 aattatattatgtgtggatgccttagtggcgggaatt 146  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  27026870 aattatattctgtgtggatgccttagtggcaggaatt 27026906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 257
Target Start/End: Complemental strand, 28969074 - 28968822
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcat-----atgcatctgtgtggtgccttagtgacggaa 104  Q
    |||||| || ||||||||||||||||   | ||||| ||||||||||||||||||||||||||||     |||||||||||||||||||||||| ||| |    
T  28969074 attatattctgtgtggtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcggga 28968975  T
Q  105 attgcaattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttat 204  Q
    |||||||||||||| |||||||||| ||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||    
T  28968974 attgcaattatattttgtgtggatgtcttggtggcgggaaatgcaattatatttctgtgtggtgcatgtgtggcgggttatatccggatcatatagttat 28968875  T
Q  205 aagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    |||| ||||||||||  |||||||||||||||||| ||||||||  |||||||    
T  28968874 aagagcatgcatcttgtgcataattgcattgagtctgttgtatacatgtgatt 28968822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 80 - 245
Target Start/End: Original strand, 55162638 - 55162803
Alignment:
Q  80 tctgtgtggtgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcg 179  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  55162638 tctgtgtggtgccttagtggcgggaattgcaattatattctgtgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcg 55162737  T
Q  180 ggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgt 245  Q
    ||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||    
T  55162738 ggttatatccggatcatgtagttataagagcatgcatcttatgcataattgcattgagtctgttgt 55162803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 40459342 - 40459553
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||||||||| | |||    
T  40459342 gtgccttagtggcgggttttaggttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 40459441  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgc 223  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||| | ||||| ||||||| |||| |    
T  40459442 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgtctgtgtggcgggttatatccggatcatgtagtatctaagagcatgcattttacac 40459541  T
Q  224 ataattgcattg 235  Q
    || |||||||||    
T  40459542 atcattgcattg 40459553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 55162529 - 55162684
Alignment:
Q  9 gattatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattg 108  Q
    ||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  55162529 gattatattctgtgtggtgccttggtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattg 55162628  T
Q  109 caattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg 166  Q
    |||||||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  55162629 caattatattctgtgtgg-tgccttagtggcgggaattgcaattata-ttctgtgtgg 55162684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 13652921 - 13653066
Alignment:
Q  21 tgtggtgccttagtgacggattttagtct-gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||| ||| |||| ||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  |||||||||||||||     
T  13652921 tgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattt 13653020  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg 166  Q
    |||||| ||| ||||||||||| |||||||| |||| ||||||||||    
T  13653021 tgtgtgaatgtcttagtggcggaaattgcaattata-ttctgtgtgg 13653066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 13661046 - 13661191
Alignment:
Q  21 tgtggtgccttagtgacggattttagtct-gcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||| ||| |||| ||| ||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||  |||||||||||||||     
T  13661046 tgtggtacctaagtggcgggttttagtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattt 13661145  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg 166  Q
    |||||| ||| ||||||||||| |||||||| |||| ||||||||||    
T  13661146 tgtgtgaatgtcttagtggcggaaattgcaattata-ttctgtgtgg 13661191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 69810 - 69873
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttac 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  69810 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagttataagagcatgcatcttac 69873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 2761849 - 2761802
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtg 98  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  2761849 cattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtg 2761802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Original strand, 49499574 - 49499656
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatag-ttataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||||||||||||||||||||||||||||  |||||| |||  | ||||| ||||||| |||| |||||||||||||    
T  49499574 tatttctgtgtggtgcctgtgtggcgggttatatccagatcatgtagaatttaagagcatgcattttacacataattgcattg 49499656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 69782 - 69823
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  69782 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 69823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 274
Target Start/End: Original strand, 41869209 - 41869287
Alignment:
Q  195 atatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaact 274  Q
    ||||||||| |||| ||||||| ||||||||||||||||||| ||  || ||||||||||| || |||||||| ||||||    
T  41869209 atatagttacaagagcatgcatgttacgcataattgcattgaatcttttatatatttgtga-ttgataattgagtaaact 41869287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 181
Target Start/End: Original strand, 55162609 - 55162661
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcggg 181  Q
    ||||||||||||||||||||||| |||||| |||||||||||||  ||||||||    
T  55162609 tgccttagtggcgggaattgcaattatatt-ctgtgtggtgccttagtggcggg 55162661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 2761795 - 2761713
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||| |||||||||||||  ||||||||||||||| | ||||| |||| | ||||| ||||||| |||| ||| |||||||||    
T  2761795 tattcctgtgtggtgccttagtggcgggttatatccgaatcatttagtatttaagagcatgcattttacacatgattgcattg 2761713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 13653032 - 13653074
Alignment:
Q  92 cttagtgacggaaattgcaattatattatgtgtggatgcctta 134  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  13653032 cttagtggcggaaattgcaattatattctgtgtggattcctta 13653074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 13661157 - 13661199
Alignment:
Q  92 cttagtgacggaaattgcaattatattatgtgtggatgcctta 134  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  13661157 cttagtggcggaaattgcaattatattctgtgtggattcctta 13661199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 49499509 - 49499562
Alignment:
Q  42 tttagtctgcatt-ttcatgatcatgcatg-gcatatgcatctgtgtggtgcct 93  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||||||    
T  49499509 tttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcct 49499562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 49499549 - 49499581
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  49499549 tctgtgtggtgcctgtgtggcgggttatttctg 49499581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 8421937 - 8422180
Alignment:
Q  9 gattatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattg 108  Q
    ||||||| || |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  8421937 gattatattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgccttagtggcggaaattg 8422036  T
Q  109 caattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataaga 208  Q
    |||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||     |||||||||||| |||||||||||||||||||    
T  8422037 caattatattctgtgtggatgccttagtggcgggaattgtgattatatttctgtgtggtgcct-----gcgggttatatccggatcatatagttataaga 8422131  T
Q  209 acatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
     ||| |||||||  ||||  ||||||||||| ||||||||  |||||||    
T  8422132 gcatacatcttatacatatgtgcattgagtctgttgtatacatgtgatt 8422180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 43407187 - 43406971
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  43407187 gtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattc 43407088  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatct 218  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| |    
T  43407087 tctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattt 43406988  T
Q  219 tacgcataattgcattg 235  Q
    ||| ||| |||||||||    
T  43406987 tacacatcattgcattg 43406971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 33007470 - 33007207
Alignment:
Q  21 tgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattat 120  Q
    ||||||| ||| |||  |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||    
T  33007470 tgtggtgtcttcgtggtggattttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtggcgggaattgcaattatattat 33007371  T
Q  121 gtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatc 217  Q
    ||||||||| |||||||||||||||||||| ||||||  ||||||| || ||  ||||||||  ||||||| ||||||||||||||||||| ||||||||    
T  33007370 gtgtggatgtcttagtggcgggaattgcaattatatta-tgtgtggatgtcttagtggcgggaattatatccggatcatatagttataagagcatgcatc 33007272  T
Q  218 ttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataat 282  Q
    |||||||||||||||||||||| ||||||||||||||  || |||| ||||||||||| ||||||    
T  33007271 ttacgcataattgcattgagtcagttgtatatttgtgtgttgataagtgattaaactattataat 33007207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 37666993 - 37666785
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| | |||    
T  37666993 gtgccttagtggcggattttagtctgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 37666894  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgc 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| |||| |    
T  37666893 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttacac 37666794  T
Q  224 ataattgca 232  Q
    || ||||||    
T  37666793 atcattgca 37666785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 338494 - 338710
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||     
T  338494 gtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattc 338593  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatct 218  Q
    | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||   ||||| ||||||| |    
T  338594 tctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtacctaagagcatgcattt 338693  T
Q  219 tacgcataattgcattg 235  Q
    ||| ||| |||||||||    
T  338694 tacacatcattgcattg 338710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 158 - 308
Target Start/End: Complemental strand, 19198474 - 19198324
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||    
T  19198474 tctgtgtggtgcctgtgtggcgggttatatccggatcatatagttataagagcatgcatcttatgcataattgcattgagtcagttgtatatttgtgatt 19198375  T
Q  258 ttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttac 308  Q
    ||| |||||||||||  | ||||||| |||||||||   ||||||||||||    
T  19198374 ttagaattgattaaaacattataatgcaaatgaaatgcatgtgaactttac 19198324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 16075252 - 16075380
Alignment:
Q  182 ttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataa 281  Q
    ||||||| ||||||||||||||||||| ||||||||||| || ||||||||||||||  |||||||||||||||||||||||||||||||| || |||||    
T  16075252 ttatatcaggatcatatagttataagagcatgcatcttatgcttaattgcattgagttagttgtatatttgtgattttataattgattaaaatattataa 16075351  T
Q  282 tgtaaatgaaatatgtgtgaactttactt 310  Q
    || |||||||||  |||||||||||||||    
T  16075352 tgcaaatgaaatgggtgtgaactttactt 16075380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 9537221 - 9537070
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaatt-- 107  Q
    |||||| || |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||      
T  9537221 attatattctgtgtggtgccttagtggcgggttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtggcgggaattgc 9537122  T
Q  108 --gcaattatattatgtgtggatgccttagtggcgggaattgcaaatatatt 157  Q
      ||||||||||| | | | ||||||||||||||||||||||||| ||||||    
T  9537121 aagcaattatattctatatagatgccttagtggcgggaattgcaattatatt 9537070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 89 - 239
Target Start/End: Complemental strand, 9537099 - 9536947
Alignment:
Q  89 tgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttat 185  Q
    |||||||||| ||| ||||||||||||||| | | | ||||||||||||| ||||||||||  ||||||| ||||||| |||||  | ||||||  ||||    
T  9537099 tgccttagtggcgggaattgcaattatattctatatagatgccttagtggtgggaattgcagttatattt-tgtgtggatgccttagcggcgggaattat 9537001  T
Q  186 atctggatcatatagttataagaacatgcatcttacgcataattgcattgagtc 239  Q
    ||| ||||||||||||||||||| ||||||||| ||||||||||| ||||||||    
T  9537000 atccggatcatatagttataagagcatgcatctcacgcataattgtattgagtc 9536947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 16075129 - 16075253
Alignment:
Q  21 tgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattat 120  Q
    |||||||||| |||| |||  |||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||| |||   || |||||||||| |    
T  16075129 tgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtgtggtgtcttagtggcgg-ggttacaattatatttt 16075227  T
Q  121 gtgtggatgccttagtggcgggaatt 146  Q
    | ||||||||||||||||||||||||    
T  16075228 gggtggatgccttagtggcgggaatt 16075253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 25921875 - 25921992
Alignment:
Q  21 tgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattat 120  Q
    |||||||||| ||||||||  ||| || | ||||||||||||||| |||| |||||||||||||||||||||||||||  ||  ||| |||||||||| |    
T  25921875 tgtggtgcctaagtgacgggattttgtttacattttcatgatcatacatgacatatgcatctgtgtggtgccttagtggtgg-gattacaattatatttt 25921973  T
Q  121 gtgtggatgccttagtggcg 140  Q
    |||||| |||||||||||||    
T  25921974 gtgtgg-tgccttagtggcg 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 6836422 - 6836500
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    ||||||||||||||||||||||||||||||| ||||||| |||| | ||||| ||||||| |||| ||| |||||||||    
T  6836422 tctgtgtggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcattg 6836500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 18472623 - 18472541
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||||||||||| |||||||||||||||| ||||||| |||| | ||||| ||| ||| |||| |||||||||||||    
T  18472623 tatttctgtgtggtgcctatgtggcgggttatatccggatcatgtagtatttaagagcatacattttacacataattgcattg 18472541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 18472677 - 18472635
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  18472677 cattttcatgatcatgcatagcatatgcatctgtgtggtgcct 18472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 35761739 - 35761657
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||| ||| |||| ||| |||||||||    
T  35761739 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatacattttacacatcattgcattg 35761657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 6836394 - 6836435
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcct 6836435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 35761820 - 35761751
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcct 93  Q
    |||||| |||| |||| |||| ||| |||||||||||||||||| | |||||||||||||||||||||||    
T  35761820 gtgcctaagtggcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 35761751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 28561834 - 28561883
Alignment:
Q  51 cattttcatgatcatgcatggcatatgca--tctgtgtggtgccttagtg 98  Q
    ||||||||||||||||||||  |||||||  |||||||||||||||||||    
T  28561834 cattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtg 28561883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 35761764 - 35761732
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  35761764 tctgtgtggtgcctgtgtggcgggttatttctg 35761732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 562 - 866
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgc 109  Q
    |||||| || |||||||||||||||| ||  |||||||||||||||||||||||||| | ||||||||||| |||||| ||||||||||  || ||||||    
T  562 attatattctgtgtggtgccttagtggcgagttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgatgccttagtggtgggaattgc 661  T
Q  110 aattatattatgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataa 206  Q
    ||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| || |||||  ||||||||  ||||| | |||||||||| ||||||    
T  662 aattatagtctgtgtggatgccttagtggcgggaattgcaattata-ttctgtgcggatgccttagtggcgggaattatacccggatcatataattataa 760  T
Q  207 gaacatgcatcttacgc--ataattgcattgagtcggttgtatatttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaact 304  Q
    || ||||||||||| ||  |||||||||||||||   ||||||||||| ||||||||||||||||||| || ||||||| ||||||||| ||||||||||    
T  761 gagcatgcatcttatgcatataattgcattgagttaattgtatatttgcgattttataattgattaaaatattataatgcaaatgaaatgtgtgtgaact 860  T
Q  305 ttactt 310  Q
    ||||||    
T  861 ttactt 866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 7336514 - 7336298
Alignment:
Q  20 gtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatatta 119  Q
    |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||     
T  7336514 gtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattc 7336415  T
Q  120 tgtgtggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatct 218  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| |    
T  7336414 tctgtggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattt 7336315  T
Q  219 tacgcataattgcattg 235  Q
    | | ||| |||||||||    
T  7336314 tgcacatcattgcattg 7336298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 41 - 235
Target Start/End: Original strand, 16975727 - 16975922
Alignment:
Q  41 ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcg 140  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  16975727 ttttagtctgcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgggaattgcaattatattctgtgtggatgccttagtggcg 16975826  T
Q  141 ggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| || | | ||||| ||||||| |||| ||| |||||||||    
T  16975827 ggaattgcaattatatttctgtgtggtgcctgtgtggcgggttatatccggatcatgtactatttaagagcatgcattttacacatcattgcattg 16975922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 5004535 - 5004394
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| | |||    
T  5004535 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctctgt 5004436  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtgg 166  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  5004435 ggatgccttagtggcgggaattgcaattatatttctgtgtgg 5004394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 52 - 257
Target Start/End: Complemental strand, 43277834 - 43277627
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcgggaattgcaaa 151  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||| ||||| || || |||||||||     
T  43277834 attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgtggataccttaatgacgcgaattgcaat 43277735  T
Q  152 tatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtata 248  Q
    |||| |||||||||| |||||  ||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  43277734 tata-ttctgtgtggatgccttagtggcaggaattatatctggatcatatagttataagagcatgcatcttacgcataattgcattgagtctgttgtata 43277636  T
Q  249 tttgtgatt 257  Q
      |||||||    
T  43277635 catgtgatt 43277627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 46404416 - 46404240
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| ||||||| |||||||||||| |  |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| | |||    
T  46404416 gtgccttagtggcgggttttagtgtgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 46404317  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt 201  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  46404316 ggatgccttagtggtgggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagt 46404240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 17542391 - 17542288
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgt 253  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| ||||||||||| |||||| ||||||||||| ||||||||  |||    
T  17542391 tatttctgtgtggtgcctgtgtggcggtttatatccggatcatacagttataagagcatgcatcttatgcataactgcattgagtctgttgtatacatgt 17542292  T
Q  254 gatt 257  Q
    ||||    
T  17542291 gatt 17542288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 274
Target Start/End: Original strand, 9104627 - 9104744
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgat 256  Q
    |||||||||||||||||||| |||||||||| ||||||| |||| | ||||| ||||||| |||| ||| ||||||||| ||| ||| || || ||||      
T  9104627 tctgtgtggtgcctgtgtggtgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcattgggtctgttatacatatgtgtg 9104726  T
Q  257 tttataattgattaaact 274  Q
    || |||| ||||||||||    
T  9104727 ttgataagtgattaaact 9104744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 11937559 - 11937493
Alignment:
Q  170 ctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    ||||||||||||||||||| ||||||| |||  ||||||||||||||| |||| |||||||||||||    
T  11937559 ctgtgtggcgggttatatccggatcatgtagaatataagaacatgcattttacacataattgcattg 11937493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 9104588 - 9104640
Alignment:
Q  42 tttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcct 93  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  9104588 tttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 9104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 17542444 - 17542403
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||| ||||||||||| ||||||| |||||||||||||||    
T  17542444 attttcgtgatcatgcatcgcatatgtatctgtgtggtgcct 17542403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 8731213 - 8731269
Alignment:
Q  42 tttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagt 97  Q
    |||||||| |||||||||||||||||| | |||||  ||||| ||||||||||||||    
T  8731213 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Original strand, 9083100 - 9083156
Alignment:
Q  42 tttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgccttagt 97  Q
    |||||||| |||||||||||||||||| | |||||  ||||| ||||||||||||||    
T  9083100 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 17542416 - 17542384
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  17542416 tctgtgtggtgcctgtgtggcgggttatttctg 17542384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 10751375 - 10751164
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| | |||    
T  10751375 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattatattctctgt 10751276  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgc 223  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| || | |    
T  10751275 ggatgccttagtggcaggaattgcaattatatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatttaagagcatgcattttgcac 10751176  T
Q  224 ataattgcattg 235  Q
    || |||||||||    
T  10751175 atcattgcattg 10751164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 23260430 - 23260273
Alignment:
Q  25 gtgccttagtgacgga-ttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtg 123  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  23260430 gtgcctaagtgacggggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtg 23260331  T
Q  124 tggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcggg 181  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23260330 tggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctgtgtggcggg 23260273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 34636578 - 34636789
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgt 124  Q
    ||||||||||| ||| ||||||| |||||||||||| || |||||||||||||||||||||||||||||||||| ||| | ||||||||||||| | |||    
T  34636578 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattctctgt 34636677  T
Q  125 ggatgccttagtggcgggaattgcaaatatatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgc 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||| |||| | ||||| ||||||| || | |    
T  34636678 ggatgccttagtggcgggaattgcaattatatttctgtgtggtgcctatgtggcgggatatatccggatcatgtagtatttaagagcatgcattttgcac 34636777  T
Q  224 ataattgcattg 235  Q
    || |||||||||    
T  34636778 atcattgcattg 34636789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 26182386 - 26182283
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgt 253  Q
    |||||||||||||||||| ||||| |||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||  ||||||||  |||    
T  26182386 tatttctgtgtggtgcctatgtggtgggttatatccggatcatatagttataaaagcatgcatcttatgcataattgcattgagtttgttgtatacatgt 26182287  T
Q  254 gatt 257  Q
    ||||    
T  26182286 gatt 26182283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 32449952 - 32449870
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||||||||||||||||||||| |||||| ||||||| |||| | ||||| ||||||| |||| ||| |||||||||    
T  32449952 tatttctgtgtggtgcctgtgtggcgggatatatccggatcatgtagtatctaagagcatgcattttacacatcattgcattg 32449870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 13773115 - 13773037
Alignment:
Q  157 ttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcatt 234  Q
    ||||||||||||| ||||||| || ||||||| ||||||| |||| | ||||| ||||||| |||| ||||||||||||    
T  13773115 ttctgtgtggtgcttgtgtggtggattatatccggatcatgtagtatttaagagcatgcattttacacataattgcatt 13773037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 13773172 - 13773130
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    ||||||||||||||||||| |||||| ||||||||||||||||    
T  13773172 cattttcatgatcatgcatagcatatacatctgtgtggtgcct 13773130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 32450033 - 32449964
Alignment:
Q  25 gtgccttagtgacggattttagtctgcattttcatgatcatgcatg-gcatatgcatctgtgtggtgcct 93  Q
    |||||| |||| |||  |||| ||| |||||||||||||||||||  |||||||||||||||||||||||    
T  32450033 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 32449964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 24164418 - 24164466
Alignment:
Q  260 ataattgattaaactagtataatgtaaatgaaatatgtgtgaactttac 308  Q
    |||||||||||||||| ||||||| ||| ||||| ||||| ||||||||    
T  24164418 ataattgattaaactattataatgcaaaagaaatgtgtgtaaactttac 24164466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 32449977 - 32449945
Alignment:
Q  158 tctgtgtggtgcctgtgtggcgggttatatctg 190  Q
    |||||||||||||||||||||||||||| ||||    
T  32449977 tctgtgtggtgcctgtgtggcgggttatttctg 32449945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 154 - 310
Target Start/End: Complemental strand, 242730 - 242574
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgt 253  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||    
T  242730 tatttctgtgtggtgcctgtgtggcgggttatatccagatcatatagttataagagcatgcatcttacgcataattgcattgcgtcagttgtatatttgt 242631  T
Q  254 gattttataattgattaaactagtataatgtaaatgaaatatgtgtgaactttactt 310  Q
    ||||||||||||||||||| || | ||||| |||||||||  |||||||||||||||    
T  242630 gattttataattgattaaaatattctaatgcaaatgaaatgggtgtgaactttactt 242574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 242783 - 242742
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||||||||| ||||| |||||||||| ||||||||||||    
T  242783 attttcatgatcttgcatagcatatgcatatgtgtggtgcct 242742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 128 - 310
Target Start/End: Complemental strand, 41958173 - 41957985
Alignment:
Q  128 tgccttagtggcgggaattgcaaatatatttctgtgtgg-tgcctgtgtggcggg--ttatatctggatcatatagttataagaacatgcatcttacgca 224  Q
    ||||||||||||||||||||||| |||||| |||||||| ||| |  |||| ||   ||||||| ||||||||||||||||||| ||| |||||||||||    
T  41958173 tgccttagtggcgggaattgcaattatatt-ctgtgtggatgctttagtggtggaaattatatccggatcatatagttataagagcatacatcttacgca 41958075  T
Q  225 taattgcattgagtcggttgtatatttgtgattttataattgattaaacta----gtataatgtaaatgaaatatgtgtgaactttactt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||| |||||||||||||||||| |||||||    
T  41958074 taattgcattgagtcggttgtatatttgtgattttataattgattaaactattatatataatgcaaatgaaatatgtgtgaattttactt 41957985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 26 - 138
Target Start/End: Complemental strand, 41958236 - 41958124
Alignment:
Q  26 tgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgtg 125  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||    
T  41958236 tgccttagtgatgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtgtg 41958137  T
Q  126 gatgccttagtgg 138  Q
    ||||| |||||||    
T  41958136 gatgctttagtgg 41958124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 257
Target Start/End: Complemental strand, 22816011 - 22815908
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgt 253  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||  |||    
T  22816011 tatttctgtgtggtgcttgtgtggcgggttatatctggatcatatagttataagagcatgcatcttacacataattgcattgagtctgttgtatacatgt 22815912  T
Q  254 gatt 257  Q
    ||||    
T  22815911 gatt 22815908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 44436630 - 44436725
Alignment:
Q  162 tgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcatcttacgcataattgcattgagtcggttgtatatttgtgatt 257  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||  |||||||    
T  44436630 tgtggtgtctgtgtggcgggttatatccggatcatacagttataagagcatgcatcttacgcataattgcattgagtctgttgtatacatgtgatt 44436725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 44436498 - 44436581
Alignment:
Q  10 attatactcagtgtggtgccttagtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||| || ||||||||||||||||  || |||||||||  |||||||||||||||| |||||||||||||||||||||||||    
T  44436498 attatattctgtgtggtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtgtggtgcct 44436581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 22635772 - 22635730
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22635772 cattttcatgatcatgcatggcatatgcatctgtgtggtgcct 22635730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 307
Target Start/End: Complemental strand, 40841212 - 40841053
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcata-----attgcattgagtcggttgtat 247  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| |||| | ||||| ||| ||| |||| ||||     ||||||||| ||| | | |      
T  40841212 tatttctatgtggtgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatacattttacacataatcgcattgcattgggtctgctatgc 40841113  T
Q  248 atttgtgattttataattgattaaactagtataatgtaaatgaaatatgtgtgaacttta 307  Q
    |||||||  || |||| ||||||||||| ||||||  ||| ||||| |||||||||||||    
T  40841112 atttgtgtgttgataagtgattaaactattataatacaaaggaaatgtgtgtgaacttta 40841053  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 22816064 - 22816023
Alignment:
Q  52 attttcatgatcatgcatggcatatgcatctgtgtggtgcct 93  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  22816064 attttcatgatcatgcatggcatatgcatctgtgcggtgcct 22816023  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 40841276 - 40841224
Alignment:
Q  42 tttagtctgcattttcatgatcatgca-tggcatatgcatctgtgtggtgcct 93  Q
    |||||||| |||||||||||||||||| | |||||||||||||||||||||||    
T  40841276 tttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 40841224  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 22635689 - 22635627
Alignment:
Q  154 tatttctgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcat 216  Q
    ||||||| |||||||| ||||||||||||||||||  |||||||||||| || || |||||||    
T  22635689 tatttctatgtggtgcatgtgtggcgggttatatccagatcatatagttttaggagcatgcat 22635627  T

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Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 3189148 - 3189092
Alignment:
Q  160 tgtgtggtgcctgtgtggcgggttatatctggatcatatagttataagaacatgcat 216  Q
    |||||||||| |||||||||||||||||| ||||||| ||||| || || |||||||    
T  3189148 tgtgtggtgcttgtgtggcgggttatatccggatcatttagttttaggagcatgcat 3189092  T

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Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 3189179 - 3189139
Alignment:
Q  51 cattttcatgatcatgcatggcatatgcatctgtgtggtgc 91  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  3189179 cattttcatgatcatgcatgacatatgcatttgtgtggtgc 3189139  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 44436592 - 44436624
Alignment:
Q  153 atatttctgtgtggtgcctgtgtggcgggttat 185  Q
    |||||||||||||||||||||||||||||||||    
T  44436592 atatttctgtgtggtgcctgtgtggcgggttat 44436624  T

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Target: scaffold0041 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 33016 - 32936
Alignment:
Q  157 ttctgtgtgg-tgcctgtgtggcgggttatatctggatcatatagt-tataagaacatgcatcttacgcataattgcattg 235  Q
    |||||||||| |||||||||||||||||||||| ||||||| |||| | ||||| ||||||| |||| ||| |||||||||    
T  33016 ttctgtgtggatgcctgtgtggcgggttatatccggatcatgtagtatttaagagcatgcattttacacatcattgcattg 32936  T

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Target: scaffold0041; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 33078 - 32991
Alignment:
Q  53 ttttcatgatcatgcatggcatatgcatctgtgtggtgccttagtgacggaaattgcaattatattatgtgtggatgccttagtggcggg 142  Q
    ||||||| |||||||||| ||||||||||||||||||||||  |||||||   |   ||||||||| |||||||||||||  ||||||||    
T  33078 ttttcattatcatgcatgacatatgcatctgtgtggtgcctgtgtgacgg--gtcataattatattctgtgtggatgcctgtgtggcggg 32991  T

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