View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_high_26 (Length: 354)
Name: NF13109_high_26
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 348
Target Start/End: Original strand, 29056196 - 29056524
Alignment:
| Q |
20 |
acaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctccacttcgatcaatgacccatgcattgaaaaaacaatcatgaa |
119 |
Q |
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| T |
29056196 |
acaaccacttcatcagtaggcgtttggatcttactccactcaacatgctgtgcttctccacttcgatcaatgacccatgcattgaaaaaacaatcatgaa |
29056295 |
T |
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| Q |
120 |
accaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttat |
219 |
Q |
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| T |
29056296 |
accaataacaaatataaagagcctgtttttacggcatattttgtaaaaaacaataatgaaaccaacaacaaatataaagagcctgtttgttacagcttat |
29056395 |
T |
|
| Q |
220 |
attgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29056396 |
attgtacaaaatcacttttcaaaattttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaac |
29056495 |
T |
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| Q |
320 |
tgtttcaagtagcttctgagaataatcta |
348 |
Q |
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| T |
29056496 |
tgtttcaagtagcttctgagaataatcta |
29056524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 313
Target Start/End: Complemental strand, 2811322 - 2811253
Alignment:
| Q |
244 |
ttttcatccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatg |
313 |
Q |
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| T |
2811322 |
ttttcatctgtttgttacaaattcttaaaaaattgagaatctgaaaataatctaaaaactgtttcaaatg |
2811253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 323
Target Start/End: Complemental strand, 21479629 - 21479534
Alignment:
| Q |
229 |
aatcacttttcaaaatttt-catccatttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
323 |
Q |
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|||||||||| | |||||| |||||||||||| ||| || ||| |||||| ||||||| |||| ||| |||||| | |||||||||||| ||||| |
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| T |
21479629 |
aatcacttttaagaattttgcatccatttgttacagctttttaaaaaaatcagaatctaaaaaaaatctaaaaacagcttcaaatgagaagctgtt |
21479534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 32848797 - 32848736
Alignment:
| Q |
20 |
acaaccacttcatcagtaggcgtttggatcttactccactcaacatactgtgcttctccact |
81 |
Q |
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||||| ||||||||||| ||||| |||||||||||||| || |||| ||| ||||| ||||| |
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| T |
32848797 |
acaacaacttcatcagttggcgtctggatcttactccattctacatgctgcgcttcaccact |
32848736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 42429792 - 42429723
Alignment:
| Q |
254 |
tttgttgcagattcttacaaaaatgagaatctgaaaataatttaaaaaatgtttcaaatgagaaactgtt |
323 |
Q |
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|||||| ||| || ||| |||||| ||||||| |||||||| |||||| |||||||||||||| ||||| |
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| T |
42429792 |
tttgttacagctttttaaaaaaatcagaatctaaaaataatctaaaaacagtttcaaatgagaagctgtt |
42429723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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