View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_high_28 (Length: 310)
Name: NF13109_high_28
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 8831432 - 8831725
Alignment:
| Q |
1 |
aatttcattgagcattctttgggagctcatatagtcatattcaaatcgaggccgatcaaaccttatcttgggtaaggcgccaaatatcaatttttatcta |
100 |
Q |
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| T |
8831432 |
aatttcattgagcattgtttgggagctcatatagtcatattcaaattaatgccgatcaaaccttatcttgggtaaggcgccaaatatcaatttttatcta |
8831531 |
T |
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| Q |
101 |
catatcctttaaccacaataatatcaacctgtcaaaaacgaaaagaactatgtgatgcttttgtcaaacacatcattgattgtaatgcaaaaagacttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
8831532 |
gatatcctttaaccacaataatatcaacctgtcaaaaacgaaaagaactatgtgatgcttttgtcaaacacatcattcattgtaacgcaaaaagacttaa |
8831631 |
T |
|
| Q |
201 |
tttttccaacaaattgattgtgatgttgatcatcagtaatagtagtgagaaaggcatacatagattatttcttgcaagtgtagaatcaagttgc |
294 |
Q |
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| T |
8831632 |
tttttccaacaaattgattgtgatgttgatcattagtaatagtagtgagaaaggcatacatagattatttcttgcaagtgtagaagcaagttgc |
8831725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 183
Target Start/End: Complemental strand, 43909820 - 43909641
Alignment:
| Q |
7 |
attgagcattctttgggagctcatatag-tcatattcaaatcgaggccgatcaaaccttatcttgggtaaggcgccaaatatcaatttttatctacatat |
105 |
Q |
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| T |
43909820 |
attgagcattgtttgggagctcacatagctaatattaaaattgatactggtgaaaacttatctagggcaaggccccaaatatcattctttatctagatat |
43909721 |
T |
|
| Q |
106 |
cctttaaccac--aataatatcaacc-tgtcaaaaacgaaaagaactatgtgatgcttttgtcaaacacatcattgattgt |
183 |
Q |
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| T |
43909720 |
cctttaaccactaaatattatcaaccttgttgaaaa-ggaaagagttatgtgatacttaagtcaaacacatcattcattgt |
43909641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 19566460 - 19566526
Alignment:
| Q |
1 |
aatttcattgagcattctttgggagctcatatagtcatattcaaatcgaggccgatcaaaccttatc |
67 |
Q |
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| T |
19566460 |
aatttcaatgagcattgtctgggagctcatatagtcatattcaatttgagaccaataaaaccttatc |
19566526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 23684689 - 23684637
Alignment:
| Q |
117 |
aataatatcaacctgtcaaaaacgaaaagaactatgtgatgcttttgtcaaac |
169 |
Q |
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| T |
23684689 |
aataatatcaacctattaaaaaagaaaagaattatgtgattcttttgtcaaac |
23684637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 253
Target Start/End: Complemental strand, 43909611 - 43909549
Alignment:
| Q |
191 |
aaagacttaatttttccaacaaattgattgtgatgttgatcatcagtaatagtagtgagaaag |
253 |
Q |
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| T |
43909611 |
aaagacttaattttccgaacaaattgatcgtgatgttgataatatgtaattgtaatgagaaag |
43909549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23684814 - 23684714
Alignment:
| Q |
1 |
aatttcattgagcattctttgggagctcatatagtcatattcaaatcgaggccgatcaaaccttat-cttgggtaaggcgccaaatatcaatttttatct |
99 |
Q |
| |
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||||||| |||||||| | ||||||||||| ||||||||||||| | ||| || || |||| |||| || ||||||| |||||||||| | ||||||| |
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| T |
23684814 |
aatttcaatgagcattgtctgggagctcatgtagtcatattcaatttgagaccaatgaaactttatcctagggtaagataccaaatatcattatttatct |
23684715 |
T |
|
| Q |
100 |
a |
100 |
Q |
| |
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| |
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| T |
23684714 |
a |
23684714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 266
Target Start/End: Complemental strand, 43902744 - 43902669
Alignment:
| Q |
191 |
aaagactt-aatttttccaacaaattgattgtgatgttgatcatcagtaatagtagtgagaaaggcatacatagatt |
266 |
Q |
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| T |
43902744 |
aaagacttcaatttttccaacaaattgatt-tgaagttgataatttgtaattgtaatgagaaagatatacatagatt |
43902669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 264
Target Start/End: Complemental strand, 42694981 - 42694908
Alignment:
| Q |
191 |
aaagacttaatttttccaacaaattgattgtgatgttgatcatcagtaatagtagtgagaaaggcatacataga |
264 |
Q |
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| T |
42694981 |
aaagacctagtttttctaacaaattcattgtgatgttgataatctgtaattgtaattcgaaagacatacataga |
42694908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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