View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_1 (Length: 890)
Name: NF13109_low_1
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 78 - 849
Target Start/End: Original strand, 7652919 - 7653692
Alignment:
| Q |
78 |
agaaagccaaatttgtgtgttttatgagtgttctatcagtggtgcttacgagagtttacattttcttatttagttttttaattacaaaggggtcctgaca |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7652919 |
agaaagccaaatttgtgtgttttatgagtgttctatcagtggtgcttacgagagtttacattttcttatttgattttttaattacaaaggggtcctgaca |
7653018 |
T |
|
| Q |
178 |
gattttataatatgttagaacatcactggcagattaaaatccgtcattaattcaatgtcacgtgcatcatcattatttgtagaaaaaatccaccactaat |
277 |
Q |
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||||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
7653019 |
gattttataatctgttagaacattactggcagat-aaaattcgtcattaattcaatgtcatgtgcatcatcattatttgtagaaaaaatccgccactaat |
7653117 |
T |
|
| Q |
278 |
ctgaggcagattggtcattaacaataatcacgggattatccgtcagtaatgtgatttccttaattattaagggtttattctgcagtaatattatcgaggg |
377 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7653118 |
ctgaggcagattggtcattaacaatactcacgggattatccgtcagtaatgtgatttccttaattattaagggtttattatgcagtaatattatcgaggg |
7653217 |
T |
|
| Q |
378 |
nnnnnnnctgtgttactgagggtttaaaccgtcagtaatttttgagggtctaaatctgtcagtaatgcagtttttgcatttgtcactgatatggtgaatt |
477 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |
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| T |
7653218 |
tttttttctgtgttactgagggtttagatcgtcagtaatttttgagggtctaaatctgtcagtaatgcag-ttttgagtttgtcgctgatatggtgaatt |
7653316 |
T |
|
| Q |
478 |
cttgtag---tgtttattttttatgttttactaaatgaaatgta-annnnnnnnatcttggcattttttaggagcgaggacactgccatgatgtataaaa |
573 |
Q |
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| T |
7653317 |
cttgtagtttttttttttttttatgttttactaaatgaaatggattttttttttatcttggcattttttaggagcgaggacactgccatgatgtataaaa |
7653416 |
T |
|
| Q |
574 |
gaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacaatgttaatttggcgctgtgtgataaggctagttcatgtgataaaacc |
673 |
Q |
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| T |
7653417 |
gaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacagtgttaatttggcgttgtgtgataaggctagttcatgtggtaaaacc |
7653516 |
T |
|
| Q |
674 |
atagttta-ttannnnnnnnnnnnnnnggagttgttcaatacatctaatactatttttgacaattataccaagagggatgaaatttctataaacaagatc |
772 |
Q |
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| T |
7653517 |
atagtttattttattttttatttttttggaattgttcaatacatct-atactatttttgacaattataccaagagggatgatatttttataaacaagatc |
7653615 |
T |
|
| Q |
773 |
aaacaaaagccgacaatatcgaacaacaaccaacaagatcgaactgagatcaaaacacaacaacgtcataaatgatg |
849 |
Q |
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| T |
7653616 |
aaacaaaagccgacaatatcgaacaacaaccaacatgatcgaactgagatcaaaacacaacaacgtcataaatgatg |
7653692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 7652852 - 7652894
Alignment:
| Q |
10 |
tgagatgaagcacaagccccttcttacgaaacgagatgaagga |
52 |
Q |
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| T |
7652852 |
tgagatgaagcacaagccccttcttacgaaacgagatgaagga |
7652894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 656
Target Start/End: Original strand, 9719328 - 9719419
Alignment:
| Q |
565 |
tgtataaaagaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacaatgttaatttggcgctgtgtgataaggcta |
656 |
Q |
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|||| ||||||| |||||| | || |||| |||| ||||||||||| |||||||||| |||| | |||||||||| ||||||||| ||||| |
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| T |
9719328 |
tgtacaaaagaaatttttagacattaattcgagagccttttatactccttgtggttgccacagtcttaatttggcattgtgtgatatggcta |
9719419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 656
Target Start/End: Original strand, 15929401 - 15929492
Alignment:
| Q |
565 |
tgtataaaagaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacaatgttaatttggcgctgtgtgataaggcta |
656 |
Q |
| |
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|||| ||||||| |||||| | || |||| |||| ||||||||||| |||||||||| |||| | |||||||||| ||||||||| ||||| |
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| T |
15929401 |
tgtacaaaagaaatttttagacattaattcgagagccttttatactccttgtggttgccacagtcttaatttggcattgtgtgatatggcta |
15929492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 656
Target Start/End: Complemental strand, 47260829 - 47260738
Alignment:
| Q |
565 |
tgtataaaagaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacaatgttaatttggcgctgtgtgataaggcta |
656 |
Q |
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|||| ||||||| |||||| | || |||| |||| ||||||||||| |||||||||| |||| | |||||||||| ||||||||| ||||| |
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| T |
47260829 |
tgtacaaaagaaatttttagacattaattcgagagccttttatactccttgtggttgccacagtcttaatttggcattgtgtgatatggcta |
47260738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 656
Target Start/End: Complemental strand, 1802323 - 1802232
Alignment:
| Q |
565 |
tgtataaaagaagtttttatatataaatttgagatccttttatacttcttgtggttgtcacaatgttaatttggcgctgtgtgataaggcta |
656 |
Q |
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|||| ||||||| |||||| | || |||| |||| ||||||||||| |||||||||| |||| | |||||||||| ||||||||| ||||| |
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| T |
1802323 |
tgtacaaaagaaatttttagacattaattcgagagccttttatactccttgtggttgccacagtcttaatttggcattgtgtgatatggcta |
1802232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 444
Target Start/End: Original strand, 6731766 - 6731815
Alignment:
| Q |
395 |
gagggtttaaaccgtcagtaatttttgagggtctaaatctgtcagtaatg |
444 |
Q |
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|
||||||||| ||||||||||||| |||||||||||||| |||||||||| |
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| T |
6731766 |
gagggtttagaccgtcagtaattactgagggtctaaatccgtcagtaatg |
6731815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 6651374 - 6651419
Alignment:
| Q |
399 |
gtttaaaccgtcagtaatttttgagggtctaaatctgtcagtaatg |
444 |
Q |
| |
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||||| ||||||| ||||| ||||||||||||||| |||||||||| |
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| T |
6651374 |
gtttagaccgtcactaattattgagggtctaaatccgtcagtaatg |
6651419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 35092011 - 35092060
Alignment:
| Q |
205 |
ggcagattaaaatccgtcattaattcaatgtcacgtgcatcatcattatt |
254 |
Q |
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| T |
35092011 |
ggcagattaaaatccgtcagtaatccaatgtcatgtgcatcatcgttatt |
35092060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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