View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_10 (Length: 589)
Name: NF13109_low_10
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 8831429 - 8830845
Alignment:
| Q |
1 |
tgtggagagatctactatgattaaagtgatattcaacaatgtagctaagttaataatgagatgctaggcagtagatttgctttgatcttgtagtcgaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8831429 |
tgtggagagatctactatgattaaagtgatattcaacaatgtagctaagttaataatgagatgctaggcagtagatttgctttgatcttgtagtcgaaga |
8831330 |
T |
|
| Q |
101 |
acaaattgggtccacgatgttaattttcttgtgtttttgccttgatgctaaaattttaccagctgcttttggttagttattgacttcttgtgtctacaaa |
200 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8831329 |
acaaattgggtccgcgatgttaattttcttgtgtttttgccttgatgct--aattttactagctgcttttggttagttattgacttcttgtgtctacaaa |
8831232 |
T |
|
| Q |
201 |
gactactggctgctgccttttgtaataggctgctgcataattactcgctggtagttaggggtgtaagtggcccagataaatccattgtacccgacaaa-- |
298 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
8831231 |
gactactggctgctgccttttgtaataggctgctgcataattactcgctggtagttaggggtgtaagtggcccggataaatccattgtacccgacaaacc |
8831132 |
T |
|
| Q |
299 |
--------ccaacccgtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgacagatt |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8831131 |
aacccaacccaacccgtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgtcaagaaccaaacacaataggtacatgtgacagatt |
8831032 |
T |
|
| Q |
391 |
ttacttatgaacccacccacctgaggagattcgtttccttaaaaggtactgcctaatgtaagtaatatgcgtcttaacaaaaacaaaatcctcacacttc |
490 |
Q |
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| T |
8831031 |
ttacttatgaacccacccacctgaggagattcgtttcct-------tactgcctaatgtaagtaatatgtgtcttaacaaaaacaaaaacctcacacttc |
8830939 |
T |
|
| Q |
491 |
acaggcttctcctcctccttcttcgaaccacaatcatgtcatcccacaccttctccttcactttgtctatgccgtccactccttctctgctgct |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
8830938 |
gcaggcttctcctcctccttcttcgaaccacaatcatgtcatcccacaccttctccttcactgtgtctatgccgtccactccttctatgctgct |
8830845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 164 - 386
Target Start/End: Complemental strand, 43989829 - 43989602
Alignment:
| Q |
164 |
tgcttttggttagttattgacttcttgtgtctacaaagactactggctgctgccttttgtaataggctgctgcataattactcgctggtagttaggggtg |
263 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | |||||||| ||||||||| || | | |
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|
| T |
43989829 |
tgcttctggttagttatcgacttcttgtgtctgcaaagattactggctgctgctttttgtaatagactgcttcttaattacttgctggtagtgagtgacg |
43989730 |
T |
|
| Q |
264 |
taagtggccca---gataaatccattgtacccgacaaaccaaccc-----gtaaatcacccgttgtttattggttcgggtcaaaaccagattgaaattgt |
355 |
Q |
| |
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| | |||| ||| ||| ||||| ||| ||||||||||| | |||||| ||| |||||||||| ||||| |||||||||| || ||| ||| |
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| T |
43989729 |
t---cgacccagatgatgaattcattgaacctgacaaaccaactcaactggtaaattacctgttgtttattagttcgagtcaaaaccaaatccaaactgt |
43989633 |
T |
|
| Q |
356 |
caagaaccaaacacaataggtacatgtgaca |
386 |
Q |
| |
|
||||||||||| ||||||||| || |||||| |
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| T |
43989632 |
caagaaccaaaaacaataggttcaggtgaca |
43989602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 23684826 - 23684903
Alignment:
| Q |
10 |
atctactatgattaaagtgatattcaacaatgtagctaagttaataatgagatgctaggcagtagatttgctttgatc |
87 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
23684826 |
atctactatgattaaagtgattcgcaacaatgtagctaagttaataatgagatgctaggaggtagatttactttgatc |
23684903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 19566448 - 19566377
Alignment:
| Q |
10 |
atctactatgattaaagtgatattcaacaatgtagctaagttaataatgagatgctaggcagtagatttgct |
81 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
19566448 |
atctactatgattaaagcaattcgcaacaatgtagctaagttaataatgagatactaggtggtagatttgct |
19566377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 302
Target Start/End: Complemental strand, 44003356 - 44003244
Alignment:
| Q |
198 |
aaagactactggctgctgccttttgtaataggctgctgcataattactcgctggtag--------ttaggggtgtaagtggcccagataaatccattgta |
289 |
Q |
| |
|
||||||||||||||| ||| |||| ||| || |||||||||||||||| || ||||| |||||||||||||||| | ||||||||||||| | |
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| T |
44003356 |
aaagactactggctgatgctttttataacagactgctgcataattacttgcgggtagactggctgttaggggtgtaagtggacaggataaatccattgaa |
44003257 |
T |
|
| Q |
290 |
cccgacaaaccaa |
302 |
Q |
| |
|
||||||||||||| |
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|
| T |
44003256 |
cccgacaaaccaa |
44003244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 43985092 - 43985044
Alignment:
| Q |
501 |
cctcctccttcttcgaaccacaatcatgtcatcccacaccttctccttc |
549 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
43985092 |
cctcctccttcttcgacccatgatcatgtcatcccacgccttctccttc |
43985044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 42415827 - 42416019
Alignment:
| Q |
36 |
acaatgtagctaagttaataatgag-atgctaggcagtagatttgctttgatcttgtagtcgaagaacaaattgggtccacgatgttaattttc-ttgtg |
133 |
Q |
| |
|
|||||||||||||||| || ||| | |||||||| ||| |||||| ||| ||| || || || ||||||||||| || | || ||| |||| ||||| |
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|
| T |
42415827 |
acaatgtagctaagttgatgatggggatgctaggtagtcgatttgtttttatcctgcagctgatgaacaaattggttctgctatattactttttattgtg |
42415926 |
T |
|
| Q |
134 |
tttttgccttgatgctaaaattttaccagctgcttttggttagttattgacttcttgtgtctacaaagactactggctgctgccttttgtaatag |
228 |
Q |
| |
|
||||||||||||| | |||||| ||||||| | |||| |||| ||||| | ||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
42415927 |
tttttgccttgatattgg--ttttacttgctgcttctagttaattatcgacttgtcatgtctgcaaagactactggctgctgctttttgtaatag |
42416019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 45094894 - 45094839
Alignment:
| Q |
32 |
ttcaacaatgtagctaagttaataatgagatgctaggcagtagatttgctttgatc |
87 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
45094894 |
ttcaacaatgcggataagttaataatgagatggtaggtagtagatttgctttgatc |
45094839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 44668079 - 44668037
Alignment:
| Q |
44 |
gctaagttaataatgagatgctaggcagtagatttgctttgat |
86 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44668079 |
gctaagttaataatgagatgctaggtggtagatttgctttgat |
44668037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 44687405 - 44687363
Alignment:
| Q |
44 |
gctaagttaataatgagatgctaggcagtagatttgctttgat |
86 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
44687405 |
gctaagttaataatgagatgctaggtggtagatttgctttgat |
44687363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 45094813 - 45094744
Alignment:
| Q |
188 |
ttgtgtctacaaagactactggctgctgccttttg--taataggctgctgcataattactcgctggtagt |
255 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||| ||||||||||||| || ||||||||| |
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|
| T |
45094813 |
ttgtgtctgcaaagtctactggctgctgctttttgcctaatagactgctgcataattccttgctggtagt |
45094744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 44642548 - 44642503
Alignment:
| Q |
32 |
ttcaacaatgtagctaagttaataatgagatgctaggcagtagatt |
77 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
44642548 |
ttcaacaatacagctaagttaataatgagatgctaggtggtagatt |
44642503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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