View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_11 (Length: 555)
Name: NF13109_low_11
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 537
Target Start/End: Original strand, 9961122 - 9961648
Alignment:
| Q |
16 |
attatgcaacaacaccatcacaattagtgttcatatttcaattcttacccatgagcgaactatttcttttgtggaatttttacttgnnnnnnnnn----- |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9961122 |
attatgcaacaacaccatcacaattagtgttcatatttcaattcttacccatgagcgaactatttcttttgtggaatttttacttgaaaaaaaaaaaaat |
9961221 |
T |
|
| Q |
111 |
tagatttgagaagacctaaaatcattgtgttgatgtttgagctacttttctttttccgccaactattcgctccattattctcattatcacatcacatttt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9961222 |
tagatttgagaagacctaaaatcattgtgttgatgtttgagctacttctctttttccgccaactattcgctccattattctcattatcacaacacatttt |
9961321 |
T |
|
| Q |
211 |
acttaatcttaaaaggtgaatttgagtttataaataaactcttgattaccacttacttatttgttgtcgttgtgtataatattgcgcctactcaactagt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9961322 |
acttaatcttaaaaggtgaatttgagtttataaataaactcttgattaccacttacttatttgttgtcgttgtgtataatattgcgcttactcaactagt |
9961421 |
T |
|
| Q |
311 |
catgtgcttacatggttagttgtctgtttgcttgattcatcgtttgcctcgatgattagacgttgtttatcagctacaggttcctaaactactctagaga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9961422 |
catgtgcttacatggttagttgtctgtttgcttgattcatcgtttgcccctatgattagacgttgtttatcagctacaagttcctaaactactctagaga |
9961521 |
T |
|
| Q |
411 |
gtgtttaatgtcgaagtttgcatgaaaggtgaaggaaaaataactaagaaacttataggcttcaacttcaagtaagtagtgacttgcataaagataagta |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9961522 |
gtgtttaatgtcgaagtttgcatgaaaggtgaaggaaaaataactaagaaacttataggcttcaacttcaagtaagtagtgacttgcataaagataagta |
9961621 |
T |
|
| Q |
511 |
gtcatttgtttaatagatcgagtgtgt |
537 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
9961622 |
gtcatttgtttaatagatcgagtgtgt |
9961648 |
T |
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