View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_12 (Length: 546)
Name: NF13109_low_12
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Complemental strand, 49929167 - 49928740
Alignment:
| Q |
18 |
ggtacaagtagtcagatggattgaaaacaggcgtttctttctcaaatctatgtgacttgcttctatgtagataactatctggattgtagagtggagattc |
117 |
Q |
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| T |
49929167 |
ggtacaagtagtcagatggattgaaaacaggcgtttctttctcaaatctatgtgacttgcttctatgtagataactatctggattgtagagtggagattc |
49929068 |
T |
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| Q |
118 |
attccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatccttaatatttctccaaaacttaaaa |
217 |
Q |
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| T |
49929067 |
attccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatccttaatatttctccaaaacttaaaa |
49928968 |
T |
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| Q |
218 |
gatcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattgacagaaacattgcctgatgatgtatatggaattcttttgcactcaa |
317 |
Q |
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| T |
49928967 |
gatcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattgacagaaacattgcctgatgatgtatatggaattcttttgcactcaa |
49928868 |
T |
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| Q |
318 |
tgcagaaattcttgtacctctcgaagtcgaaagcttctctctttgctgcatttgttagacatgcatttgcctgaggaaaaatgtgtagcagagggaaatg |
417 |
Q |
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| T |
49928867 |
tgcagaaattcttgtacctctcgaagtcgaaagcttctctctttgctgcatttgttagacatgcatttgcctgaggaaaaatgtgcagcagagggaaatg |
49928768 |
T |
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| Q |
418 |
agattttgtaccattgttacaatacttg |
445 |
Q |
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| T |
49928767 |
agattttgtaccattgttacaatacttg |
49928740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 485 - 543
Target Start/End: Complemental strand, 49928703 - 49928645
Alignment:
| Q |
485 |
tgacaaaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttc |
543 |
Q |
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| T |
49928703 |
tgacaaaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgtttgttc |
49928645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 271
Target Start/End: Original strand, 13695379 - 13695553
Alignment:
| Q |
97 |
tggattgtagagtggagattcattccttgacattgaatttactctcatacaattctcaaccaccttagcctcctcattaaatctctctctaatatcctta |
196 |
Q |
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| T |
13695379 |
tggattataaagtggagattctctcttcgacactgaattttttcttagacaattctctatcaccttagcctcttcctttaatctttctctcatgtcctta |
13695478 |
T |
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| Q |
197 |
atatttctccaaaacttaaaagatcttgattttgtgataatattccatgccttgaaacctgaaccacttgaattg |
271 |
Q |
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| T |
13695479 |
atgtttcttctaactttactagatattgatttgctgataatgttccatggcttgaaacttgaaccattagaattg |
13695553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 539
Target Start/End: Original strand, 13696049 - 13696098
Alignment:
| Q |
490 |
aaactaacctcagaaacaagtttgaaggcaatttcagcttttggatgttt |
539 |
Q |
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| T |
13696049 |
aaactaacctcagagacaagcttgaatgcaatttcagccttgggatgttt |
13696098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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