View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_13 (Length: 536)
Name: NF13109_low_13
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Original strand, 25738554 - 25739046
Alignment:
| Q |
20 |
gtggccgtcccttcctgtgagaatcgaaaggttacnnnnnnnnnntgcttttgaaacaaatccatttaaatttaccaaaatctaggacagatcacagatc |
119 |
Q |
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| T |
25738554 |
gtggccgtcccttcctgtgagaaccgaaaggtta-attaagaaaatgcttttgaaacaaatccatttaaatttaccaaaatctaggacagatcacagatc |
25738652 |
T |
|
| Q |
120 |
aatatctgtttgcgtgtagcatgtgtgcaggtagttccgttgaaaacgggcttaaatcaaatactcacaacgtggtctccatctctaatttggcaggtta |
219 |
Q |
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| T |
25738653 |
aatatctgtttgcgtgtagcatgtgtgcagatagttccgttgaaaacgggcttaaatcaaatactcacaacgtggtctccatctctaatttggcaggtta |
25738752 |
T |
|
| Q |
220 |
ttgactaacattaacacttattaattctgcatgcttcatgctccttaggccagcaataataaatgatgttnnnnnnntttaggggcagttaccaaattag |
319 |
Q |
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| T |
25738753 |
ttgactaacattaacacttattaattctgcatgcttcatgctccttaggccagcaataataaattatgttaaaaaaatttaggggcagttaccaaattag |
25738852 |
T |
|
| Q |
320 |
tttatttaagtaaattacaaccaaatgaaaatggcaatatatagttt-gaatatttaataagaaacnnnnnnnngtcctacttaagtcccatgagagtga |
418 |
Q |
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| T |
25738853 |
tttattcaagtaaattacaaccaaatgaaaatggcaatatatagtttggaatatttaataagaaacaaaaaaaagtcctacttaagtcccatgagagtga |
25738952 |
T |
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| Q |
419 |
attgacaccaaccactttatttcttattacagaatcatagaatgagtgtaccacaagttaaaaggtttgttcaattcataaagataatactcct |
512 |
Q |
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| T |
25738953 |
attgacaccaaccactttatttcttattacagaatcatagaatgagtgtaccacaagttaaaaggtttgttcaattcataaagataatactcct |
25739046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 71 - 289
Target Start/End: Original strand, 25724963 - 25725187
Alignment:
| Q |
71 |
tgaaacaaatccatttaaatttaccaaaatctaggacagatcacagatcaatatctgtttgcgtgta-------gcatgtgtgcaggtagttccgttgaa |
163 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||| |||||||||| |||| || ||||||| ||||| || ||| | || |||||||| |
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| T |
25724963 |
tgaaacaaatccatttaaatgtaccaaaatctaggacagctcacagatcaccatctctt-gcgtgtaactataagcatgagttcagctggtaccgttgaa |
25725061 |
T |
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| Q |
164 |
aacgggcttaaatcaaatactcacaacgtggtctccatctctaatttggcaggttattgactaacattaacacttattaattctgcatgcttcatgctcc |
263 |
Q |
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| T |
25725062 |
gacgggcttaaatcaaatactcataacgtggtctccgtctctaatctggcaagttattgacttacataaacactaattaattctgcatgctccatgcccc |
25725161 |
T |
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| Q |
264 |
ttaggccagcaataataaatgatgtt |
289 |
Q |
| |
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| T |
25725162 |
taaggccagcaataataaattatgtt |
25725187 |
T |
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