View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_14 (Length: 492)
Name: NF13109_low_14
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 11 - 474
Target Start/End: Original strand, 49772712 - 49773166
Alignment:
| Q |
11 |
caaaggaatggccccagtcgactattaaatagctgcactctctctttcaatatatattcaccaaatcaacaacttgnnnnnnnnn-aaaacaaccaaatc |
109 |
Q |
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| T |
49772712 |
caaaggaatggccccagtcgactattaaatagctgcactctctctttcaatatatattcaccaaatcaacaacttgttttttttttaaaacaaccaaatc |
49772811 |
T |
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| Q |
110 |
aacaagttaataggttgagaccatgggttaccctacaaactctagctagctttatgcttaaattttaagtgtatgaatgaaatataaactgaaaagaaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49772812 |
aacaagttaataggttgagaccatgggttaccctacaaactctagctagctttatgcttaaatttgaagtgtatgaatgaaatataaactgaaaagaaaa |
49772911 |
T |
|
| Q |
210 |
cgatatattcatattgaattgttggcagttacccaaagccaatcattaaatttttatactacaagactttaaacctgtgccatgccatactttgatcaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49772912 |
cgatatattcatattgaattgttggcagttacccaaagccaatcattaaatttttatactacaagactttaaacctgtgccatgccatactttgatcaca |
49773011 |
T |
|
| Q |
310 |
tgcatatatatcatcatattctcaatcctcgtcccgattccatgaccctctgattgttggaattataaaatgatttctttttctacatcaaccataaata |
409 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49773012 |
tgc----atatcatcatattctcaatcctcgtcccgattccatgaccctctgattgttggaataataaaatgatttctttttctacatcaaccataaata |
49773107 |
T |
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| Q |
410 |
taatcctcgtcctcaacccatacattccatctctgtctctgatatgccaaactgttcattagtca |
474 |
Q |
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||||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||| |
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| T |
49773108 |
taatcctcgtcctcaccccattcattcca------tctctgatatgcctaactgttcattagtca |
49773166 |
T |
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