View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_15 (Length: 482)
Name: NF13109_low_15
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 424; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 2 - 457
Target Start/End: Complemental strand, 3789376 - 3788921
Alignment:
| Q |
2 |
gcaccacagagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctt |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789376 |
gcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctt |
3789277 |
T |
|
| Q |
102 |
tcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789276 |
tcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatt |
3789177 |
T |
|
| Q |
202 |
tatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaaggcaatgtgtttgaaaatgaagaaaatgactattaagaat |
301 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
3789176 |
tatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggaaatgtgtttgaaaatgaagaaaatgactattactaat |
3789077 |
T |
|
| Q |
302 |
atagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtttttataatctattatttcttgttgttttgaatt |
401 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789076 |
atagaagaaggtggccagtcatcacataatcttcaaaagtttattagttgggcgaattattaatgtttttataatctattatttcttgttgttttgaatt |
3788977 |
T |
|
| Q |
402 |
agtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt |
457 |
Q |
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| T |
3788976 |
agtggtgttaaatattcatgtatgatgaaggaaaaacaattagtggtgtctctttt |
3788921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 2 - 410
Target Start/End: Original strand, 3800731 - 3801136
Alignment:
| Q |
2 |
gcaccacagagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctt |
101 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| |||||||||| |
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| T |
3800731 |
gcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctt |
3800830 |
T |
|
| Q |
102 |
tcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggatt |
201 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3800831 |
tcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatggtta |
3800930 |
T |
|
| Q |
202 |
tatatcaaggcaagagataaataagaaggtggatcaagtagttggtgatgatgatataaaggcaatgtgtttgaaaatgaagaaaatgactattaagaat |
301 |
Q |
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|||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3800931 |
tatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatgacataaaggcaatgtgtttgaaaatgaagaaaatgactattactaat |
3801030 |
T |
|
| Q |
302 |
atagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtttttataatctattatttcttgttgttttgaatt |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
3801031 |
atagaagaaggtggccagtcatcacataatctccaaaagtttattacttgggcgaattattaatgtgtttataatctatta---cttgttgttttgaatt |
3801127 |
T |
|
| Q |
402 |
agtggtgtt |
410 |
Q |
| |
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|||| |||| |
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|
| T |
3801128 |
agtgttgtt |
3801136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 192
Target Start/End: Complemental strand, 3768025 - 3767850
Alignment:
| Q |
17 |
atattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccat |
116 |
Q |
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|||||||||||||| || || ||||| ||||| ||||| ||||| |||||||| || || ||||||||| || | ||| |||||||||| |||||||||| |
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| T |
3768025 |
atattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaaggtgtatattctggtatacctttcttatgttggccat |
3767926 |
T |
|
| Q |
117 |
ttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
192 |
Q |
| |
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|| ||||||||||||| || || || ||||||||||||||||||||| |||| |||||||||| || ||||| |
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| T |
3767925 |
ttgcaactgatcaatttacgaacaagtcatatatttgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 198
Target Start/End: Complemental strand, 3780303 - 3780122
Alignment:
| Q |
17 |
atattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccggtgtacctttcttgtgttggccat |
116 |
Q |
| |
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||||||||||| || || |||||||| ||||| ||||| || ||||||||||| ||| | ||||||||| || |||||||||||||||||||||||| | |
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| T |
3780303 |
atattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaaggtgtatatagcggtgtacctttcttgtgttggccgt |
3780204 |
T |
|
| Q |
117 |
ttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatgg |
198 |
Q |
| |
|
|| |||||||||| | || || || ||| ||||||||||||||||| |||||||||| |||| || ||||| ||||| |
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|
| T |
3780203 |
ttcacggtgatcaatttatgaacaagtcatatgtttgtgatgtgtggaaggttggacttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 3755299 - 3755159
Alignment:
| Q |
95 |
gtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatg |
194 |
Q |
| |
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|||||||| ||||||| ||||||||| | ||||||| || | || || | |||||||||||||| |||||| |||| | | ||| || || ||||| |
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| T |
3755299 |
gtacctttgttgtgtttgccattttttagtgatcaacttatgaacaagacatatatttgtgatgtttggaaggttggattgggatttgaaaaggatgaaa |
3755200 |
T |
|
| Q |
195 |
atggatttatatcaaggcaagagataaataagaaggtggat |
235 |
Q |
| |
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||||||| ||| ||| | ||||||||| |||||||||||| |
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| T |
3755199 |
atggattaataacaaagggagagataaagaagaaggtggat |
3755159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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