View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_17 (Length: 437)
Name: NF13109_low_17
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_17 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 40632065 - 40632503
Alignment:
| Q |
1 |
tggttattgttaacattttaggatatgttcagaaggatttgcacatcactaagaagaacattagaaataacttgaccgacaagcaattttaccccactaa |
100 |
Q |
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| T |
40632065 |
tggttattgttaacatttgaggatatgttcagaaggatttgcacatcactaagaagaacattagaaataacttgaccgacaagcaattttaccccactaa |
40632164 |
T |
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| Q |
101 |
aacacctcaaaatgcgcagcttgaaattgatacaactcacaaaaatgattcaaatgttgagaggctggaaactgatattgtgatagtgaacttggagcag |
200 |
Q |
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| T |
40632165 |
aacacctcaaaatgcgcagcttgaaattgatacaactcacaaaaatgattcaaatgttgagaggctggaaactgataatgtgatagtgaacttggagcag |
40632264 |
T |
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| Q |
201 |
gaaggagccaaggatgatgaggctggaacaacaatcatacaagatctatctcaagatcctaccttggttctgcataactcattcacttttcttcatgatg |
300 |
Q |
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| T |
40632265 |
gaaggagccaaggatgatgaggctggaacaaaaatcatacaagatctatctcaagatcctaccttggttctgcataactcattcacttttcttcatgatg |
40632364 |
T |
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| Q |
301 |
agaatgatatcccttat-gggagtgttaacttatttccaattggctgtactgggacacctggtg-aaaaaaggtccttaacagatggttgcatcaaaagt |
398 |
Q |
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| T |
40632365 |
agaataatatcccttatggggagtgttagcttatttccaattggctgtactggaacacctagtgaaaaaaaggtccttaacagatggttgcatcaaaagt |
40632464 |
T |
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| Q |
399 |
cttcaaattttaagtacttcaaacaactcagatgtggat |
437 |
Q |
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| T |
40632465 |
cttcaaattttaagtgcttcaaacaactcagatgtggat |
40632503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 50904277 - 50904245
Alignment:
| Q |
213 |
gatgatgaggctggaacaacaatcatacaagat |
245 |
Q |
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| T |
50904277 |
gatgatgaggctgtaacaacaatcatacaagat |
50904245 |
T |
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