View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_low_19 (Length: 377)

Name: NF13109_low_19
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_low_19
NF13109_low_19
[»] chr4 (12 HSPs)
chr4 (45-360)||(5181814-5182153)
chr4 (45-360)||(5195212-5195547)
chr4 (45-275)||(5159668-5159905)
chr4 (45-265)||(4842704-4842927)
chr4 (45-233)||(5172630-5172821)
chr4 (55-153)||(5213602-5213703)
chr4 (310-357)||(5159582-5159629)
chr4 (331-360)||(4843028-4843057)
chr4 (331-360)||(5172565-5172594)
chr4 (16-48)||(5159942-5159974)
chr4 (16-48)||(5182190-5182222)
chr4 (16-48)||(5195584-5195616)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 45 - 360
Target Start/End: Complemental strand, 5182153 - 5181814
Alignment:
Q  45 aagaactctgaggtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 141  Q
    ||||||||| |||||||||||||||||||||||||| |||||||  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5182153 aagaactctaaggtttgttaagttgcttaaacactctggaagtttagcactaaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 5182054  T
Q  142 agtcatgtcataa----ttaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt-aaagtttttccaatggcatcaatatatacat 236  Q
    |||| ||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  5182053 agtcctgtcataattaattaactatgtcctgtcatctatacaaaaattgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacat 5181954  T
Q  237 taattaacttatttcattgtttttgttaattatttaa----------------aaaagttatcttcattgtaacaatccatccccaaaaccatcccgtga 320  Q
    |||||||||||||||||| ||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||||||||    
T  5181953 taattaacttatttcattctttttgttaattatttaaaatttaaaatcaatataaaagttatcttcattgtaacaatccatccccaaaaccatcccgtga 5181854  T
Q  321 agcagttatgaattaattatttatgtttgatagtattgat 360  Q
    |||| ||||||||||||||||| |||||| ||||||||||    
T  5181853 agcaattatgaattaattatttgtgtttggtagtattgat 5181814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 45 - 360
Target Start/End: Complemental strand, 5195547 - 5195212
Alignment:
Q  45 aagaactctgaggtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 141  Q
    ||||||||||||||||||||||||||||||||| || |||||||  ||  |||||||||| | ||||||||||| ||||||||||||||| |||||||||    
T  5195547 aagaactctgaggtttgttaagttgcttaaacaatctggaagtttagcactaaacatgtttttgctgatatccagttctaccaaatccttaaaattgcat 5195448  T
Q  142 agtcatgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatctt-aaagtttttccaatggcatcaatatatacattaat 240  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  5195447 agtcctgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaaagtttttccaatggcgtcaatatatacattaat 5195348  T
Q  241 taacttatttcattgtttttgttaattattt----------------aaaaaagttatcttcattgtaacaatccatccccaaaaccatcccgtgaagca 324  Q
    ||||||||||| |||||||||||||||||||                ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5195347 taacttatttcgttgtttttgttaattatttaaaatttaaaataaaaaaaaaagttatcttcattgtaacaatcgatccccaaaaccatcccgtgaagca 5195248  T
Q  325 gttatgaattaattatttatgtttgatagtattgat 360  Q
     ||||||||||||||||| |||||| ||||||||||    
T  5195247 attatgaattaattatttgtgtttggtagtattgat 5195212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 45 - 275
Target Start/End: Complemental strand, 5159905 - 5159668
Alignment:
Q  45 aagaactctgaggtttgttaagttgcttaaacactcgggaagtt--gct-taaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 141  Q
    |||||||||||||||||||||||||||||||||||| |||| ||  ||  |||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  5159905 aagaactctgaggtttgttaagttgcttaaacactcaggaaatttagcactaaacatgttctggctgatatccagttctaccaaatccttcaaattgcat 5159806  T
Q  142 agtcatgtcataattaa----ctatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatatacatt 237  Q
    |||| ||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5159805 agtcctgtcataattaattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcgtcaatatatacatt 5159706  T
Q  238 aattaacttatttcattgtttttgttaattatttaaaa 275  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5159705 aattaacttatttcattgtttttgttaattatttaaaa 5159668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 4842704 - 4842927
Alignment:
Q  45 aagaactctgaggtttgttaagttgcttaaacactcgggaagttg---cttaaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 141  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||    |  ||||||||| | ||||||||||| |||| ||||||||||||||||||||    
T  4842704 aagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttcttccaaatccttcaaattgcat 4842803  T
Q  142 agtcatgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatatacattaatt 241  Q
    |||| |||||||||||||||||||| |||||||||  ||||||| |||||||||||||||||||||||||||||||||||  |||||||||| |||||||    
T  4842804 agtcctgtcataattaactatgtccggtcatctttcaaaaaattaacattatcataaaaatcttaaagtttttccaatggactcaatatataaattaatt 4842903  T
Q  242 aacttatttcattgtttttgttaa 265  Q
     |||||||||||||||||||||||    
T  4842904 tacttatttcattgtttttgttaa 4842927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 45 - 233
Target Start/End: Complemental strand, 5172821 - 5172630
Alignment:
Q  45 aagaactctgaggtttgttaagttgcttaaacactcgggaagttg---cttaaacatgttatagctgatatccaattctaccaaatccttcaaattgcat 141  Q
    ||||| |||||||||||||||||| ||||||||||| |||||||    |  ||||||||| | ||||||||||| |||||||||||||||||||||||||    
T  5172821 aagaattctgaggtttgttaagttacttaaacactcaggaagtttagccccaaacatgtttttgctgatatccagttctaccaaatccttcaaattgcat 5172722  T
Q  142 agtcatgtcataattaactatgtcctgtcatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggcatcaatatata 233  Q
    |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5172721 agtcctgtcataattaactatgtccagttatctttacaaaaattgacattatcataaaaatcttaaagtttttccaatggactcaatatata 5172630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 55 - 153
Target Start/End: Complemental strand, 5213703 - 5213602
Alignment:
Q  55 aggtttgttaagttgcttaaacactcgggaagttgct---taaacatgttatagctgatatccaattctaccaaatccttcaaattgcatagtcatgtca 151  Q
    ||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||| |  ||||||||||||||||| |||||||||| |||||    
T  5213703 aggtttgttaagttgcttaaacactcgggaagttgcgcgctaaacatgttatagctgatatctagctctaccaaatccttcaatttgcatagtcctgtca 5213604  T
Q  152 ta 153  Q
    ||    
T  5213603 ta 5213602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 310 - 357
Target Start/End: Complemental strand, 5159629 - 5159582
Alignment:
Q  310 ccatcccgtgaagcagttatgaattaattatttatgtttgatagtatt 357  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  5159629 ccatcccgtgaagcagttatgaattaattatttgtgtttggtagtatt 5159582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Original strand, 4843028 - 4843057
Alignment:
Q  331 aattaattatttatgtttgatagtattgat 360  Q
    ||||||||||||||||||||||||||||||    
T  4843028 aattaattatttatgtttgatagtattgat 4843057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 360
Target Start/End: Complemental strand, 5172594 - 5172565
Alignment:
Q  331 aattaattatttatgtttgatagtattgat 360  Q
    ||||||||||||||||||||||||||||||    
T  5172594 aattaattatttatgtttgatagtattgat 5172565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 5159974 - 5159942
Alignment:
Q  16 gtatgccagtgatgtgagattgctaaggaaaga 48  Q
    |||||||||||||||||||||||||| ||||||    
T  5159974 gtatgccagtgatgtgagattgctaatgaaaga 5159942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 5182222 - 5182190
Alignment:
Q  16 gtatgccagtgatgtgagattgctaaggaaaga 48  Q
    |||||||||||||||||||||||||| ||||||    
T  5182222 gtatgccagtgatgtgagattgctaatgaaaga 5182190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 5195616 - 5195584
Alignment:
Q  16 gtatgccagtgatgtgagattgctaaggaaaga 48  Q
    |||||||||||||||||||||||||| ||||||    
T  5195616 gtatgccagtgatgtgagattgctaatgaaaga 5195584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University