View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_low_2 (Length: 758)

Name: NF13109_low_2
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_low_2
NF13109_low_2
[»] chr3 (11 HSPs)
chr3 (336-743)||(6137970-6138375)
chr3 (336-743)||(13284039-13284444)
chr3 (359-740)||(6163060-6163438)
chr3 (19-262)||(6138376-6138619)
chr3 (359-729)||(6135262-6135631)
chr3 (73-262)||(13283849-13284038)
chr3 (492-744)||(6132160-6132416)
chr3 (626-736)||(6270500-6270611)
chr3 (72-151)||(21570356-21570435)
chr3 (651-736)||(6260979-6261064)
chr3 (19-50)||(13283477-13283508)
[»] chr2 (1 HSPs)
chr2 (72-151)||(16576236-16576315)
[»] chr1 (3 HSPs)
chr1 (72-151)||(3231946-3232025)
chr1 (70-146)||(52432654-52432730)
chr1 (103-152)||(45136757-45136806)
[»] chr6 (1 HSPs)
chr6 (72-118)||(32047195-32047241)
[»] chr5 (1 HSPs)
chr5 (72-149)||(972874-972951)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 336 - 743
Target Start/End: Complemental strand, 6138375 - 6137970
Alignment:
Q  336 atattaatgatgatataataagttattatggatccaaacattaatgatggtattccattctttatttaagttatttctacaatttttattatatccattt 435  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  6138375 atattaatgatgacataatacgttattatggatccaaacattaatgatg--attccattcattatttaagttatttctacaatttttatgatatccattt 6138278  T
Q  436 gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttacttttaaccaatattgataatcacttaattctaattcgtgattgatgca 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6138277 gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaattctaattcgtgattgatgca 6138178  T
Q  536 tacagaatctcattccaagtatctgggactcctgctatacaccaatgagtacaatccattccatgggcataattgtgaatactaggatgtccatcttttc 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138177 tacagaatctcattccaagtatctgggactcctgctatacaccaatgagtacaatccattccatgggcataattgtgaatactaggatgtccatcttttc 6138078  T
Q  636 tcaattctgataaagctgtaatgttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtga 735  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6138077 tcaattctgataaagctgtaatgttgagaagctgaacaggtttggttattttctgcaacacattttgcaatacatatgatgctggtggcaatccaagtga 6137978  T
Q  736 ggatgatg 743  Q
    ||||||||    
T  6137977 ggatgatg 6137970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 336 - 743
Target Start/End: Original strand, 13284039 - 13284444
Alignment:
Q  336 atattaatgatgatataataagttattatggatccaaacattaatgatggtattccattctttatttaagttatttctacaatttttattatatccattt 435  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13284039 atattaatgatgacataatacgttattatggatccaaacattaatgatg--attccattctttatttaagttatttctacaatttttattatatccattt 13284136  T
Q  436 gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttacttttaaccaatattgataatcacttaattctaattcgtgattgatgca 535  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  13284137 gtcacgtcaagttcctaaaacccacttagatttcctcattgtagatgcttactttaaaccaatattgataatcacttaattttaattcgtgattgatgca 13284236  T
Q  536 tacagaatctcattccaagtatctgggactcctgctatacaccaatgagtacaatccattccatgggcataattgtgaatactaggatgtccatcttttc 635  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  13284237 taaagaatctcattccaagtatctgggactcctgctatacaccaatgagtacaatccattccgtgggcattattgtgaatactaggatgtccatcttttc 13284336  T
Q  636 tcaattctgataaagctgtaatgttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtga 735  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13284337 tcaattctgataaagctgtaatgttgagaagctgaacaggttttgttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtga 13284436  T
Q  736 ggatgatg 743  Q
    ||||||||    
T  13284437 ggatgatg 13284444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 359 - 740
Target Start/End: Complemental strand, 6163438 - 6163060
Alignment:
Q  359 tattatggatccaaacattaatgatggtattccattctttatttaagttatttctacaatttttattatatccatttgtcacgtcaagttcctaaaaccc 458  Q
    ||||||||| |||||||| |||| ||  ||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  6163438 tattatggacccaaacatcaatggtg--attccattccttatttaagttatttctacaatttttataatattcatttgtcacgtcaagttcctaaaaccc 6163341  T
Q  459 acttagatttcctcattgtagatgcttacttttaaccaatattgataatcacttaattctaattcgtgattgatgcatacagaatctcattccaagtatc 558  Q
    |||||||||||||||||| | |||||| |||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  6163340 acttagatttcctcattggaaatgcttgctttaaaccaatattggtaatcacttaattcaaattcatgattgatgcatacataatctcattccaagtatc 6163241  T
Q  559 tgggactcctgctatacaccaatgagtacaatccattccatgggcataattgtgaatactaggatgtccatcttttctcaattctgataaagctgtaatg 658  Q
    |||||| ||  ||||||||||||||| ||||||||| | ||||  || ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6163240 tgggaccccaactatacaccaatgag-acaatccatcctatggaaattattgtgaatactaggatgtccatcttttctcaattctgatagagctgtaatg 6163142  T
Q  659 ttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatg 740  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6163141 ttgagaagctgaacaggcttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatg 6163060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 6138619 - 6138376
Alignment:
Q  19 ccctggacttctatttcttatgcttgtttattcacgagtatttgtttattgcttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138619 ccctggacttctatttcttatgcttgtttattcacgagtatttgtttattgcttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaat 6138520  T
Q  119 agcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgtaagtttcaataaaataatttgtatttgtgatcactattttaattttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6138519 agcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgtaagtttcaataaaataatttgtatttgtgatcactattttaattttt 6138420  T
Q  219 ctgatggactatgcaatgtaatatcatccacgtaagagtatttc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6138419 ctgatggactatgcaatgtaatatcatccacgtaagagtatttc 6138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 359 - 729
Target Start/End: Complemental strand, 6135631 - 6135262
Alignment:
Q  359 tattatggatccaaacattaatgatggtattccattctttatttaagttatttctacaatttttattatatccatttgtcacgtcaagttcctaaaaccc 458  Q
    ||||||||| |||||||| |||| ||  ||||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||||||| ||||||||    
T  6135631 tattatggacccaaacatcaatggtg--attccattccttatttaagttatttctacaatttttataatattcatttgtcacctcaagttcttaaaaccc 6135534  T
Q  459 acttagatttcctcattgtagatgcttacttttaaccaatattgataatcacttaattctaattcgtgattgatgcatacagaatctcattccaagtatc 558  Q
    ||||||||||| | |||| |||| ||| |||| |||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  6135533 acttagatttctttattggagattcttgctttaaaccaatattgataatcacttaattctaatttatgattgatgcatagagaatctcattccaagtatc 6135434  T
Q  559 tgggactcctgctatacaccaatgagtacaatccattccatgggcataattgtg-aatactaggatgtccatcttttctcaattctgataaagctgtaat 657  Q
    |||||| |||||||||||||||||||||||||||||   ||||   | |||||| ||||||||||| |||||||||| |||||||||||| ||||||||     
T  6135433 tgggacccctgctatacaccaatgagtacaatccatcttatggaagttattgtgaaatactaggatttccatcttttatcaattctgatagagctgtaac 6135334  T
Q  658 gttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatcc 729  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6135333 gttgagaagctgaacaagtttggttattttttgcaacacattttgcaatacatatgatgctggtgccaatcc 6135262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 73 - 262
Target Start/End: Original strand, 13283849 - 13284038
Alignment:
Q  73 gttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgta 172  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13283849 gttgaatgaatgagttgaataagtttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaataggtttattgtttagtcgta 13283948  T
Q  173 agtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatcatccacgtaagagtatttc 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13283949 agtttcaataaaataatttgtatttgtgatcactattttaatttttctgatggactatgcaatgtaatatcatccacgtaagagtatttc 13284038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 492 - 744
Target Start/End: Complemental strand, 6132416 - 6132160
Alignment:
Q  492 aaccaatattgataatcacttaattctaattcgt----gattgatgcatacagaatctcattccaagtatctgggactcctgctatacaccaatgagtac 587  Q
    ||||||||||| ||||||| |||||||||||  |    |||||||||||||| || |||||||||||||||||| || || |||| ||||||||| ||||    
T  6132416 aaccaatattgctaatcacataattctaattattcactgattgatgcatacaaaagctcattccaagtatctggtaccccagctacacaccaatgtgtac 6132317  T
Q  588 aatccattccatgggcataattgtgaatactaggatgtccatcttttctcaattctgataaagctgtaatgttgagaagctgaacaggtttggttatttt 687  Q
    ||||||| ||||||     ||| |||  |||||||||||||||||||||||||||||| | |||||||||||| |||| || ||  |||||||||| |||    
T  6132316 aatccatgccatggaagccattatgagaactaggatgtccatcttttctcaattctgagagagctgtaatgttcagaaactcaattggtttggttacttt 6132217  T
Q  688 ttgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatgatgt 744  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  6132216 ttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgt 6132160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 626 - 736
Target Start/End: Complemental strand, 6270611 - 6270500
Alignment:
Q  626 ccatcttttctcaattctgataaagctgtaatgttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacat-atgatgctggtggc 724  Q
    |||||||||||| ||||| | | | |||||||||||||||||||||||   |||||||| ||||| ||||||||||||||||||| | |||| ||||||     
T  6270611 ccatcttttctctattctaagagatctgtaatgttgagaagctgaacaaacttggttatattttgtaacacattttgcaatacataaagatgttggtgga 6270512  T
Q  725 aatccaagtgag 736  Q
    ||||||||||||    
T  6270511 aatccaagtgag 6270500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 21570435 - 21570356
Alignment:
Q  72 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 151  Q
    ||||||| |||| || |||| ||| |||||||||||||||||||||||| |||  |||| |||||||||||| |||||||    
T  21570435 tgttgaacgaattagatgaaaaagtttgatgttcttgtgatgaaaatagtaatcaattgtaagaataaagataaagaaaa 21570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 651 - 736
Target Start/End: Complemental strand, 6261064 - 6260979
Alignment:
Q  651 ctgtaatgttgagaagctgaacaggtttggttattttttgcaacacattttgcaatacat-atgatgctggtggcaatccaagtgag 736  Q
    ||||||||||||||||||||||||  |||||||||||||| ||||||  |||| |||||| | |||| |||||| ||||||||||||    
T  6261064 ctgtaatgttgagaagctgaacagacttggttattttttgtaacaca-attgctatacataaagatgttggtggaaatccaagtgag 6260979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 13283477 - 13283508
Alignment:
Q  19 ccctggacttctatttcttatgcttgtttatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  13283477 ccctggacttctatttcttatgcttgtttatt 13283508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 16576315 - 16576236
Alignment:
Q  72 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 151  Q
    ||||||||||| ||| |||| ||| |||||||||||| || |||||| | ||||||||| ||||| |||| |||||||||    
T  16576315 tgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaaaggtgaagaaaa 16576236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 3232025 - 3231946
Alignment:
Q  72 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaa 151  Q
    ||||||||||||||  |||| ||| ||| |||||||| |||||||||||||| |||||| ||  ||||| ||||||||||    
T  3232025 tgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaatagcaactgattgtaaagataaacatgaagaaaa 3231946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 52432730 - 52432654
Alignment:
Q  70 cttgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaa 146  Q
    |||||| |||||| ||| |||| ||| || ||||||||| ||||||||| | ||||||||  |||||||||||||||    
T  52432730 cttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattataagaataaagatgaa 52432654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 45136757 - 45136806
Alignment:
Q  103 ttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaaaat 152  Q
    |||||| ||||||||||  || |||||| |||||||||||||||||||||    
T  45136757 ttcttgcgatgaaaataataactgattgtaagaataaagatgaagaaaat 45136806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 32047241 - 32047195
Alignment:
Q  72 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaat 118  Q
    ||||||||||||||| |||| ||| |||||||||||| |||||||||    
T  32047241 tgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaat 32047195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 972951 - 972874
Alignment:
Q  72 tgttgaatgaatgagttgaataaggttgatgttcttgtgatgaaaatagcaattgattgaaagaataaagatgaagaa 149  Q
    |||| |||||| ||| |||| ||  ||||| |||||||||||||||| |||| |||||  || |||||||||||||||    
T  972951 tgttaaatgaaagagatgaagaaatttgattttcttgtgatgaaaatggcaactgatttcaaaaataaagatgaagaa 972874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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