View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_20 (Length: 376)
Name: NF13109_low_20
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_20 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Complemental strand, 3789707 - 3789344
Alignment:
| Q |
14 |
tacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggaaa |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3789707 |
tacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggcaa |
3789608 |
T |
|
| Q |
114 |
gaagactcaacttgcttagattggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaattta |
213 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789607 |
gaagactcaacttgcttagaatggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaattta |
3789508 |
T |
|
| Q |
214 |
atgaactagccctaggacttgatcttcttgacaagccttttctgtgggttgtccgtcctagtaatgacaataaggtaaactatacataccctaatgactt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789507 |
atgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggtaaactatacataccctaatgactt |
3789408 |
T |
|
| Q |
314 |
ccatggaagtaaaggtaaaattgttgg-tgggcaccacaaagtaaaatattgaaccatccagcc |
376 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3789407 |
ccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaaccatccagcc |
3789344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 376
Target Start/End: Original strand, 3800400 - 3800763
Alignment:
| Q |
14 |
tacttgtgatcttgaacctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggaaa |
113 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3800400 |
tacttgtgatcttgagcctggtgtattttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggcaa |
3800499 |
T |
|
| Q |
114 |
gaagactcaacttgcttagattggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaattta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800500 |
gaagactcaacttgcttagattggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaattta |
3800599 |
T |
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| Q |
214 |
atgaactagccctaggacttgatcttcttgacaagccttttctgtgggttgtccgtcctagtaatgacaataaggtaaactatacataccctaatgactt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800600 |
atgaactagccctaggacttgatcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggtaaactatacataccctaatgactt |
3800699 |
T |
|
| Q |
314 |
ccatggaagtaaaggtaaaattgttgg-tgggcaccacaaagtaaaatattgaaccatccagcc |
376 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
3800700 |
ccatggaagtaaaggtaaaattgttggttgggcaccacaaagtaaaatattgaatcatccagcc |
3800763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 42 - 328
Target Start/End: Complemental strand, 3768343 - 3768057
Alignment:
| Q |
42 |
tccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggaaagaagactcaacttgcttagattggttag |
141 |
Q |
| |
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||||| ||||||||||||||||||||||| ||||||||||||| | | | ||||||||||||||| ||| |||||||| |||| |||||||||| ||| |
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| T |
3768343 |
tccatctcaccaaagttcctaccaattggcccattgatggaaaatgatagcaacaaaagttcattctggcaagaagacatgacttccttagattggctag |
3768244 |
T |
|
| Q |
142 |
ataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttct |
241 |
Q |
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|||| ||| || | ||||| ||| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3768243 |
ataagcaaccatcacaatcggtcgtatatgtttccttcggtagtttggcagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttct |
3768144 |
T |
|
| Q |
242 |
tgacaagccttttctgtgggttgtccgtcctagtaatgacaataaggtaaactatacataccctaatgacttccatggaagtaaagg |
328 |
Q |
| |
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||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||| |||| |||| |||| |||||| |
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| T |
3768143 |
tgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctgatgaattcctcggaactaaagg |
3768057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 38 - 369
Target Start/End: Complemental strand, 3780625 - 3780293
Alignment:
| Q |
38 |
attttccatatcaccaaagttcctaccaattggtccattgatggaaagtaacaacaacaaaagttcattatggaaagaagactcaacttgcttagattgg |
137 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||| ||| || | |||||| ||||||||| ||| |||||||| |||| || ||||||||| |
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| T |
3780625 |
attttccatatcaccaaagtttctaccaattggtccattcatgtcaatcgaagacaacacaagttcattctggcaagaagacgcaacatgtttagattgg |
3780526 |
T |
|
| Q |
138 |
ttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatc |
237 |
Q |
| |
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| ||| || | |||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
3780525 |
ctcgatcaatatccacctcaatccgtcgcatatgtttcctttggtagtttggccgtaatggaccaaaaccaatttaacgaactagctttaggacttgatc |
3780426 |
T |
|
| Q |
238 |
ttcttgacaagccttttctgtgggttgtccgtcctagtaatgacaataaggtaaactatacataccctaatgacttccatggaagtaaaggtaaaattgt |
337 |
Q |
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||||||| || |||||| | |||||||| ||||| || ||||| ||||||||||||||| |||||||| |||| || | ||||| |||||| || ||||| |
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| T |
3780425 |
ttcttgataaaccttttatttgggttgttcgtccgagcaatgataataaggtaaactatgcataccctgatgaatttcttggaactaaaggaaagattgt |
3780326 |
T |
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| Q |
338 |
tgg-tgggcaccacaaagtaaaatattgaacca |
369 |
Q |
| |
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||| ||||| || |||| || ||||||||||| |
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| T |
3780325 |
tggatgggcgccgcaaaagaagatattgaacca |
3780293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 3755700 - 3755472
Alignment:
| Q |
40 |
tttccatatcaccaaagttcctaccaattggtccattgatggaaagt---aacaacaacaaaagttcattatggaaagaagactcaacttgcttagattg |
136 |
Q |
| |
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||||| |||||||||| || ||||||||||||||||| ||||||| | | ||||||| | || || ||| ||||||| ||| ||| |||| || |
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| T |
3755700 |
tttccttatcaccaaaatttctaccaattggtccattaatggaaaatgagcataacaacatgggatctttgtggcaagaagatgaaacatgcatagaatg |
3755601 |
T |
|
| Q |
137 |
gttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgat |
236 |
Q |
| |
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||||||| || | ||||| |||| |||||||||||||| |||||||| || || ||| | | ||| ||||| || ||| |||| ||||| |||||| |
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| T |
3755600 |
gttagatcaatatccacctaaatctgtcatatatgtttcatttggtagtttaatatcaattggtccaaatcaattcaaagaattagctctagggcttgat |
3755501 |
T |
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| Q |
237 |
cttcttgacaagccttttctgtgggttgt |
265 |
Q |
| |
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|||||||| | ||||||||| |||||||| |
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| T |
3755500 |
cttcttgaaaggccttttctttgggttgt |
3755472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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