View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_21 (Length: 368)
Name: NF13109_low_21
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_21 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 37501246 - 37501630
Alignment:
| Q |
1 |
tggaccgtcaaacatcatctcattagcgtggta-caaaatatatccccaggtcatttatgcctcaaaattaaggaactacggtataatggggaaagcatc |
99 |
Q |
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| T |
37501246 |
tggatcgtcaaacatcctcttattagcgtggtaacaaaatatatctccacgtcatttatgcctcaaaattaaggatctacggtataatggggaaaacatc |
37501345 |
T |
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| Q |
100 |
attgctgatctaaatctgcccttatctcctaaattttgtgcctcagtacaagaattgaaaccaaccataattccctcattg----------------gaa |
183 |
Q |
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| T |
37501346 |
attgctgatctaaatctgcacttatctcctaaattttgtgcctcagtacaagaattgaaaccaaccataattccctgattttctgacacttgggtgtgga |
37501445 |
T |
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| Q |
184 |
acgataatttaaatggaaaatacacaacaaaaagtgtttatcattggctcttatctttgagggatgatattgtctcattggagaaatgaaattggatttg |
283 |
Q |
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| T |
37501446 |
acgataatttaaatggaaaatacacaacaaaaagtgtgtatcattggctcttatcttggagggatgatattgtctcattgaagaaatgaaattggatttg |
37501545 |
T |
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| Q |
284 |
gaaattaccactttcagccggtgtgtagtcttttatctggctggtttgtcgtaactctattccaactaaataagtcttacaccat |
368 |
Q |
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| T |
37501546 |
gaaattatcactttcagctagtgtgcagtcttttatctggctggtttgtcgtaactctattccaactaaataagtcttacaccat |
37501630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 346
Target Start/End: Original strand, 33928336 - 33928476
Alignment:
| Q |
206 |
cacaacaaaaagtgtttatcattggctcttatctttgagggatgatattgtctcattggagaaatgaaattggatttggaaattaccactttcagccggt |
305 |
Q |
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| T |
33928336 |
cacagcaaaaagtgtgtatcactggctcttatcttggagggatgatattgtctcattagagaaatggaattggattttgaagttaccactttcagctagt |
33928435 |
T |
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| Q |
306 |
gtgtagtcttttatctggctggtttgtcgtaactctattcc |
346 |
Q |
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| T |
33928436 |
gtgcaattttttatttggcagatttgtcacaattctattcc |
33928476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 9194089 - 9194016
Alignment:
| Q |
189 |
aatttaaatggaaaatacacaacaaaaagtgtttatcattggctcttatctttgagggatgatattgtctcatt |
262 |
Q |
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| T |
9194089 |
aatttaaacgaagaatacacaacaaaaagtgcatatcaccggctcttatctcggagggatggtattgtctcatt |
9194016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 33928254 - 33928333
Alignment:
| Q |
92 |
aaagcatcattgctgatctaaatctgcccttatctcctaaattttgtgcctcagtacaagaattgaaaccaaccataatt |
171 |
Q |
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| T |
33928254 |
aaagcatcattgctgagctaaatcttctcctatctcctgaaattgttacctcagtacaggagttaaaaccaaccataatt |
33928333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 138 - 360
Target Start/End: Complemental strand, 32926217 - 32925995
Alignment:
| Q |
138 |
tgcctcagtacaagaattgaaaccaaccataattccctca-ttggaaacgataatttaaatggaaaatacacaacaaaaagtgtttatcattggctctta |
236 |
Q |
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| T |
32926217 |
tgcctcaatacaggagttgaaaccaaccataattacctaaattggaaa-gacaatttaaacggagaatacacagcaaaaagtgcg-atcactggctctta |
32926120 |
T |
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| Q |
237 |
tctttgagggatgatattgtctcattggagaaatgaaattggatttggaaattaccactttcagccggtgtg-tagtcttttatctggctggtttgtcgt |
335 |
Q |
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| T |
32926119 |
tctcggagggatgatattgtctcattggagaaatggaattggatttggaaattaccactttcggctagtgtgcaatttttttatatggcaggtgtttcat |
32926020 |
T |
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| Q |
336 |
aactctattccaactaaataagtct |
360 |
Q |
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| T |
32926019 |
aattctattccaactaaatatgtct |
32925995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 10405828 - 10405943
Alignment:
| Q |
186 |
gataatttaaatggaaaatacacaacaaaaagtgtttatcattggctcttatctttgagggatgatattgtctcattggagaaatgaaattggatttgga |
285 |
Q |
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| T |
10405828 |
gataatttaaatggagaatacacgacaaaaagtgtgtatcgctggctcttatctcggaggcatgttattgtctcactgaagaaatggaattggatttgga |
10405927 |
T |
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| Q |
286 |
aattaccactttcagc |
301 |
Q |
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| T |
10405928 |
agttaccactttcagc |
10405943 |
T |
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