View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_22 (Length: 367)
Name: NF13109_low_22
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 278
Target Start/End: Original strand, 48662289 - 48662549
Alignment:
| Q |
16 |
tcacatggaggttgcgtcaaaattaatgtgtgtattatatacatttatttaatcttactaaagaattcctaaatcatgcaaaccacgttctatgtactgc |
115 |
Q |
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| T |
48662289 |
tcacatggaggttgcgtcaaaattaatgcgtgtattatatacatttatttaatcttactaaagaattcctaaatcatgcaaactacgttctatgtactgc |
48662388 |
T |
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| Q |
116 |
acacaacctagttttgacaacctccattctatgttttactatnnnnnnnnnnnngagtaaatgactgagctgtgagtaaatgaagtgtaatataaagtat |
215 |
Q |
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| T |
48662389 |
acacaacctaattttgacaacctccattctatgttttac--ttaaaaaaaaaaagagtaaatgactgagctgtgagtcaatgaagtgtaatataaaatat |
48662486 |
T |
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| Q |
216 |
aaacatagtatgtactaaagtattaaatcccccacctaatttggtttctgcatacgtacgttt |
278 |
Q |
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| T |
48662487 |
aaacatagtatgtactaaagtattaaatcccccacctaatttggtttctgcatatgtacgttt |
48662549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 271 - 365
Target Start/End: Original strand, 48663285 - 48663379
Alignment:
| Q |
271 |
gtacgtttatgtttataagctatacaatcttatactataaagaattcctaaattaagcatcaatctatctatttgtctcttataaagcaattact |
365 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48663285 |
gtacctttatgtttataagctatacaatcttatactataaagaattcctaaattaagcatcaatctatctatttgtctcttataaagcaattact |
48663379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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