View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13109_low_23 (Length: 361)
Name: NF13109_low_23
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 23423342 - 23423009
Alignment:
| Q |
18 |
tcacttgatcttccaaaaagaacagggtcaggaaaatcctttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
23423342 |
tcacttgatcttccaaaaagaacagggtcaggaaaatcttttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaact |
23423243 |
T |
|
| Q |
118 |
cagaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttttt |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423242 |
caaaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttttt |
23423143 |
T |
|
| Q |
218 |
agcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23423142 |
agcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatag |
23423043 |
T |
|
| Q |
318 |
ggtatagagtgtttaactgtgagtttcatctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
23423042 |
ggtatagagtgtttaactgtgagtttcatttgtg |
23423009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 549286 - 549619
Alignment:
| Q |
18 |
tcacttgatcttccaaaaagaacagggtcaggaaaatcctttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccaagaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
549286 |
tcacttgatcttccaaaaagaacagggtcaggaaaatcatttaccttaaaagaaacatttgaaactggaatgtcaaatgtttttgttgtgtccatgaact |
549385 |
T |
|
| Q |
118 |
cagaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttttt |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549386 |
caaaggaaacactctcatctagtttgggaagattaagacagaattgaagtgatataactgatgaagtagcgaaaatataagacataaggttgaatttttt |
549485 |
T |
|
| Q |
218 |
agcgatgtcgattacatcgcttgagaaaagatcaaaaaccaaacaaacaaagtttgtttttgaacaagttaccattttgttaacttcttgatgcaaatag |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
549486 |
agcgatgtcgattacatcacttgagaaaagatcaaaaaccaaaccaacaaagtttgtttttgaacaagttacgattttgttaacttcttgatgcaaatag |
549585 |
T |
|
| Q |
318 |
ggtatagagtgtttaactgtgagtttcatctgtg |
351 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
549586 |
ggtatagagtgtttaactgtgagtttcatttgtg |
549619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University