View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_24 (Length: 361)
Name: NF13109_low_24
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 121 - 335
Target Start/End: Complemental strand, 52947907 - 52947692
Alignment:
| Q |
121 |
gacatccattctactcttttacatcattacaaactaacattcaaagattttttgattcaaacaacaaacaaaatataacaagnnnnnnnnnc--agagga |
218 |
Q |
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| T |
52947907 |
gacatccattctactcttttacatcattataaactagcattcaaagattttttgattcaaacaacaaacaaaagataagaagaagaaaaaaataagagga |
52947808 |
T |
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| Q |
219 |
tatgnnnnnnntgttctacctcaatcgcaagccaaaaaccgcttcttctaccgtcgatcaccttcacaaaccttcgttgaccatcgattacactttgttg |
318 |
Q |
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| T |
52947807 |
ta-ggttagaatgttctacctcaatcgcaagccaaaaaccgcttcttctaccgtcgatcaccttcaaaaaccttcgctaactgttgattacacttcgttg |
52947709 |
T |
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| Q |
319 |
ccgtgattcaccgtcaa |
335 |
Q |
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| T |
52947708 |
ccgtgattcaccgtcaa |
52947692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 52948003 - 52947969
Alignment:
| Q |
25 |
aaactttgttaataaaccttcatcttcgtctctac |
59 |
Q |
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| T |
52948003 |
aaactttgttaataaaccttcatcttcgtctctac |
52947969 |
T |
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