View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_27 (Length: 349)
Name: NF13109_low_27
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 36969187 - 36968908
Alignment:
| Q |
1 |
aaactgtggatacatgatgatttcagtttctcctaattttttctctttcgacgttttcttgatcaattgactaatacgatatcaaaccacttgtcatcaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36969187 |
aaactgtggatacatgatgatttcagtttctcctaattttttctctttcgacgttttcttgatcaattgactaatacgatatcaaaccacttgccatcaa |
36969088 |
T |
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| Q |
101 |
ccacattccttccattagaattagactcaaatctttcttnnnnnnnnnnnnggaattagactcaaatctcttaagtagtctaatgttgcaggacaaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36969087 |
ccacattccttccattagaattagactcaaatatttctt--aaaaaaaaaaggaattagactcaaatctcttaagtagtctaatgttgcaggacaaaaac |
36968990 |
T |
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| Q |
201 |
aagattaagaggaaagatcactaagccatgttcgaagaggaaggttaagcatccataaactgttgaatttgcagagaaaaaa |
282 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36968989 |
aagattaagaggaaagatcactaagccacattcgaagaggaaggttaagcatccataaactgttgaatttgcagagaaaaaa |
36968908 |
T |
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