View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_30 (Length: 289)
Name: NF13109_low_30
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_30 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 16463547 - 16463818
Alignment:
| Q |
18 |
agaggtccttcaagccttactgaaaacattctcaaggtaactttattccaagtgttcctatatgcagttcatttcatcattaaattaaccaagaattaaa |
117 |
Q |
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| T |
16463547 |
agaggtccttcaagccttactgaaaacattctcaaggtaactttattccaagtgttcctatatgcagttcatttcatcattaaattaaccaagaattaaa |
16463646 |
T |
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| Q |
118 |
gaagcatctttagaaaatgtactcactgtttttcgctgaatctattgtcaagccggatgtcatggctccaggagtttcaatattggctgctttcattcct |
217 |
Q |
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| T |
16463647 |
gaagcatctttagaaaatgtactcactgtttttcgctgaatctattgtcaagccggatgtcatggctccaggagtttcaatattggctgctttcattcct |
16463746 |
T |
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| Q |
218 |
gaaaaagaaaatgttccaatcggtaaaaagccatcgatgtttggcataaaatctggtacatctatggcttgc |
289 |
Q |
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| T |
16463747 |
gaaaaagaaaatgttccaatcggtaaaaagccatcgatgtttggcatacaatctggtacatctatggcttgc |
16463818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 16493706 - 16493848
Alignment:
| Q |
156 |
aatctattgtcaagccggatgtcatggctccaggagtttcaatattggctgctttcattcc---------tgaaaaagaaaatgttccaatcggtaaaaa |
246 |
Q |
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| T |
16493706 |
aatctattgtcaagcctgatgtcatggctccaggagttgccattttggctgccatgattcccaatagtgatgagccaggaagtgttccaattgggaaaaa |
16493805 |
T |
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| Q |
247 |
gccatcgatgtttggcataaaatctggtacatctatggcttgc |
289 |
Q |
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| T |
16493806 |
ggcatccttatttggcataaaatctggtacatctatggcttgc |
16493848 |
T |
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