View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_low_33 (Length: 255)

Name: NF13109_low_33
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_low_33
NF13109_low_33
[»] chr1 (2 HSPs)
chr1 (1-241)||(37500983-37501223)
chr1 (13-241)||(9194327-9194555)
[»] chr5 (1 HSPs)
chr5 (13-136)||(8989260-8989384)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 37501223 - 37500983
Alignment:
Q  1 tctccatctccgttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgtttttggtttttctaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37501223 tctccatctccgttttgtaggagaaaccatcttctaacacataaagagttttgaggattgcattccaaataggtgaacctgtttttgctttttctaaaaa 37501124  T
Q  101 catattccccttttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37501123 catattccccttttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgt 37501024  T
Q  201 tttgtagtcgagctggatgaactcctagacctccaagcttc 241  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  37501023 tttgtagtcgagttggatgaactcctagacctccaagcttc 37500983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 9194327 - 9194555
Alignment:
Q  13 ttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgtttttggtttttctaaaaacatattcccct- 111  Q
    |||| |||| ||||||||||| ||| | ||||||||  |||||||||||||||||||| || ||||| ||  ||| ||| | || |||||| || ||||     
T  9194327 ttttttaggcgaaaccatcttttaaaatatcaagagacttgaggattgcattccaaattggcgaacc-gtccttgatttgtatataaacattttaccctc 9194425  T
Q  112 tttcaagtatttatcagcaaggatagacacccataacttcttgtctgattgcacgaaactccaaacaagttttcccaacaaagttgtgttttgtagtcga 211  Q
    ||| ||||||||||  |||||||||||||||||||| ||  |||||||||||   | ||  |||||||||||||||||||||||||||||||||  ||      
T  9194426 ttttaagtatttattggcaaggatagacacccataattttgtgtctgattgcttaagacaacaaacaagttttcccaacaaagttgtgttttgttatcat 9194525  T
Q  212 gctggatgaactcctagacctccaagcttc 241  Q
    ||||| |||| |||||||||||||||||||    
T  9194526 gctggctgaaatcctagacctccaagcttc 9194555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 8989384 - 8989260
Alignment:
Q  13 ttttgtaggagaaaccatcttctaacacatcaagagttttgaggattgcattccaaataggtgaacctgtttttggtttttctaaaaacatattcccct- 111  Q
    ||||||||| | ||||||| || ||| ||||| ||||||||| ||||| || || ||||||| ||| ||| |||| ||||||| |||| ||||| ||||     
T  8989384 ttttgtaggcggaaccatcatcaaacgcatcacgagttttgatgattgaatacctaataggtaaacatgtctttgctttttctgaaaatatattaccctc 8989285  T
Q  112 tttcaagtatttatcagcaaggata 136  Q
    ||||||||||||||| |||||||||    
T  8989284 tttcaagtatttatcggcaaggata 8989260  T

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