View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_low_35 (Length: 242)

Name: NF13109_low_35
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_low_35
NF13109_low_35
[»] chr1 (10 HSPs)
chr1 (20-242)||(19310435-19310656)
chr1 (107-192)||(35624689-35624774)
chr1 (105-191)||(10187024-10187110)
chr1 (106-192)||(21432112-21432198)
chr1 (86-192)||(49054014-49054119)
chr1 (107-192)||(44524465-44524550)
chr1 (107-192)||(49061594-49061678)
chr1 (212-242)||(21432039-21432069)
chr1 (135-193)||(48366497-48366555)
chr1 (193-242)||(43358533-43358582)
[»] chr4 (9 HSPs)
chr4 (88-192)||(3415599-3415703)
chr4 (106-192)||(18736830-18736916)
chr4 (113-191)||(18670519-18670597)
chr4 (71-192)||(24129104-24129225)
chr4 (91-180)||(47071084-47071176)
chr4 (117-192)||(3425147-3425222)
chr4 (212-242)||(18670642-18670672)
chr4 (128-192)||(30020297-30020361)
chr4 (214-242)||(47071212-47071240)
[»] chr8 (1 HSPs)
chr8 (86-191)||(25953607-25953712)
[»] chr7 (3 HSPs)
chr7 (107-191)||(12239434-12239518)
chr7 (92-191)||(37469098-37469197)
chr7 (91-164)||(24870665-24870738)
[»] chr5 (6 HSPs)
chr5 (107-192)||(9851256-9851341)
chr5 (106-191)||(2022630-2022715)
chr5 (116-191)||(43378119-43378193)
chr5 (136-191)||(29006706-29006761)
chr5 (212-242)||(2022764-2022794)
chr5 (212-242)||(35369278-35369308)
[»] chr6 (7 HSPs)
chr6 (107-192)||(24075619-24075704)
chr6 (136-191)||(21937271-21937326)
chr6 (88-183)||(24509284-24509383)
chr6 (212-241)||(2887295-2887324)
chr6 (193-242)||(21937352-21937401)
chr6 (193-242)||(24509485-24509534)
chr6 (130-191)||(28611983-28612044)
[»] chr3 (2 HSPs)
chr3 (107-192)||(49784164-49784250)
chr3 (135-192)||(52653994-52654051)
[»] chr2 (2 HSPs)
chr2 (126-180)||(16272133-16272187)
chr2 (212-242)||(716162-716192)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 19310435 - 19310656
Alignment:
Q  20 ttacattaacaagaatgcaagtgtccatcgttcccatgaacgttacagccattaaccacaaatacgtcataaatcgaacctaaagattgttagaatttgt 119  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  19310435 ttacattaacaagaatgcaagtgaccatcgttct-atgaacgttacagtcattaaccacaaatacgtcataaatcaaacctaaagattgttagaacttgt 19310533  T
Q  120 gttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattcgttggaaagaggctattgtacttgaaa 219  Q
    |||| ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  19310534 gttgaaggtctgctacaataacttaactaagaagatgataaagatgtatatgatgaagtgtgcacataaattcgttggaaagaggctgttgtacttgaaa 19310633  T
Q  220 cctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||    
T  19310634 cctgaaaagtttaatggttatgc 19310656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 35624689 - 35624774
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||||||| ||||||||| |||||||| |||||||||||  || |||||||| |||||| |||| | ||||||||||| |||||||    
T  35624689 tgttagaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaatattacgaagtgtgcacataaattc 35624774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 10187110 - 10187024
Alignment:
Q  105 attgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    |||||| ||| ||||||  | ||||||||||||||||||||| || ||||||||||| |||  |||||||||| |||||| ||||||    
T  10187110 attgttggaacttgtgtgcggggtctgctacaataacttgatcaagaagatgataaatatgactatgatgaagcgtgcacataaatt 10187024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 21432198 - 21432112
Alignment:
Q  106 ttgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    ||||| ||| ||||||||| |||||||| |||||||||||  || |||||||| |||||| | ||| |||||||||||| |||||||    
T  21432198 ttgttggaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgctgaagtgtgcacataaattc 21432112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 49054119 - 49054014
Alignment:
Q  86 tcataaatcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcact 185  Q
    ||||||||||||||||||||||||| ||| || |||||| |||||||| | |||| || |  ||||||||||  |||||| | |||||||||||| |||     
T  49054119 tcataaatcgaacctaaagattgttggaacttatgttgggggtctgctgcgataa-tttaccaaaaagatgaagaagatgaacatgatgaagtgtacaca 49054021  T
Q  186 taaattc 192  Q
    |||||||    
T  49054020 taaattc 49054014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 44524550 - 44524465
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||| ||| |||| |||| |||||| | |||||||||||| || |||||||| |||||| | |||||||||| ||||| |||||||    
T  44524550 tgttggaacttgtattgggggtctgttgcaataacttgatcaagaagatgatgaagatgaacatgatgaagtatgcacataaattc 44524465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 49061678 - 49061594
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||||||| ||||||||| |||||||| |||||| || |  ||||||||||  |||||| | |||||||||||||||| |||||||    
T  49061678 tgttagaacttgtgttgg-ggtctgctgcaataattttaccaaaaagatgaagaagatgaacatgatgaagtgtgcacataaattc 49061594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 21432069 - 21432039
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||||    
T  21432069 acttgaaacctgaaaagtttaatggttatgc 21432039  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 193
Target Start/End: Complemental strand, 48366555 - 48366497
Alignment:
Q  135 caataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattcg 193  Q
    |||||||||||| || |||||||| |||||| | |||||||||||||||  ||||||||    
T  48366555 caataacttgatcaagaagatgatgaagatgaacatgatgaagtgtgcaaataaattcg 48366497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 43358533 - 43358582
Alignment:
Q  193 gttggaaagaggctattgtacttgaaacctgaaaagtttaatggttatgc 242  Q
    ||||| |||| ||| ||| |||||||||||||||||||||||| ||||||    
T  43358533 gttgggaagatgctgttgcacttgaaacctgaaaagtttaatgattatgc 43358582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 3415703 - 3415599
Alignment:
Q  88 ataaatcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcactta 187  Q
    ||||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||  || |||||||| |||||| | |||||||||||||||| ||    
T  3415703 ataaatcgaacctaaagattgttggaacttgtgttgggggtctgctgcaataacttgaccaagaagatgatgaagatgaacatgatgaagtgtgcacata 3415604  T
Q  188 aattc 192  Q
    |||||    
T  3415603 aattc 3415599  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 18736830 - 18736916
Alignment:
Q  106 ttgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    ||||| ||||||||||||| ||||||||  ||||||||| | || |||||||| |||||| |  ||||||||||||||| |||||||    
T  18736830 ttgttggaatttgtgttgggggtctgctgtaataacttggtcaagaagatgattaagatgaacttgatgaagtgtgcacataaattc 18736916  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 113 - 191
Target Start/End: Original strand, 18670519 - 18670597
Alignment:
Q  113 aatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    |||| |||||||  ||||| | |||||||||||  || ||||||||||||||| | |||||||||||||||| ||||||    
T  18670519 aattagtgttgggcgtctgttgcaataacttgaccaagaagatgataaagatgaacatgatgaagtgtgcacataaatt 18670597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 192
Target Start/End: Original strand, 24129104 - 24129225
Alignment:
Q  71 ttaaccacaaatacgtcataaatcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatat 170  Q
    |||||||||||||    |||||| ||||||||| || |||||||  ||||||||||||| |||| ||||| ||||| || |||  ||| | |||| ||||    
T  24129104 ttaaccacaaataaacgataaattgaacctaaaaatggttagaacatgtgttggaggtcagctataataatttgatcaagaaggcgatgatgatgaatat 24129203  T
Q  171 gatgaagtgtgcacttaaattc 192  Q
    ||||||  |||||| |||||||    
T  24129204 gatgaaaagtgcacataaattc 24129225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 47071084 - 47071176
Alignment:
Q  91 aatcgaacctaaagattgtt----agaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgt 180  Q
    ||||||||||||||||||||    | || |||| |||| |||||||||||||||||||| ||| |||||||| |||||| | |||| |||||||    
T  47071084 aatcgaacctaaagattgttttatataacttgttttgg-ggtctgctacaataacttgactaagaagatgatgaagatgaacatgacgaagtgt 47071176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 3425222 - 3425147
Alignment:
Q  117 tgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||||||| | |||||| |||||||||||  || |||||||| |||||| | ||||| |||||||||| |||||||    
T  3425222 tgtgttggggatctgctgcaataacttgaccaagaagatgatgaagatgaacatgataaagtgtgcacataaattc 3425147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 18670642 - 18670672
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||||    
T  18670642 acttgaaacctgaaaagtttaatggttatgc 18670672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 30020361 - 30020297
Alignment:
Q  128 tctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||||| |||||||||||  || |||||||| ||||||  ||||||||||||||||  |||||||    
T  30020361 tctgctgcaataacttgaccaagaagatgatgaagatgactatgatgaagtgtgcatataaattc 30020297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 47071212 - 47071240
Alignment:
Q  214 ttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||    
T  47071212 ttgaaacctgaaaagtttaatggttatgc 47071240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 191
Target Start/End: Complemental strand, 25953712 - 25953607
Alignment:
Q  86 tcataaatcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcact 185  Q
    |||||||||||||||||||||||||| || ||||||||| |||||| | ||||||||| |  || ||||| || |||||| ||||||||||||||||||     
T  25953712 tcataaatcgaacctaaagattgttacaacttgtgttgggggtctgatgcaataacttaaccaagaagataatgaagatgaatatgatgaagtgtgcaca 25953613  T
Q  186 taaatt 191  Q
    ||||||    
T  25953612 taaatt 25953607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 191
Target Start/End: Original strand, 12239434 - 12239518
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    |||||||| ||||||||||||| |||| ||||||||||||||| |||||||| | |||| |||||||||||||||||| ||||||    
T  12239434 tgttagaacttgtgttggaggtttgctgcaataacttgattaagaagatgatgatgatgaatatgatgaagtgtgcacataaatt 12239518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 191
Target Start/End: Complemental strand, 37469197 - 37469098
Alignment:
Q  92 atcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    |||||||||||||||||||||||  |||||||| ||| |||  |||||||||||| || |||||||| |||||| | ||||| || ||||||| ||||||    
T  37469197 atcgaacctaaagattgttagaacctgtgttgggggtttgcagcaataacttgatcaagaagatgatgaagatgaacatgattaaatgtgcacataaatt 37469098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 24870738 - 24870665
Alignment:
Q  91 aatcgaacctaaagattgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagat 164  Q
    ||||||||||||||||||||||||  | |||||| ||| |||| |||||||||||| || |||||||| |||||    
T  24870738 aatcgaacctaaagattgttagaacctatgttgggggtttgctgcaataacttgatgaagaagatgatgaagat 24870665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 9851256 - 9851341
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    ||||||||  ||||| ||||||||||| |||||||||||| ||||||||||| |||||| | |||||||| ||||||| |||||||    
T  9851256 tgttagaacatgtgtaggaggtctgctgcaataacttgatcaaaaagatgatgaagatgaacatgatgaattgtgcacataaattc 9851341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 191
Target Start/End: Original strand, 2022630 - 2022715
Alignment:
Q  106 ttgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    ||||| ||| ||||||||| |||||||| |||||||||||| || |||||||| |||||| | |||||||| ||||||| ||||||    
T  2022630 ttgttggaacttgtgttgggggtctgctgcaataacttgatcaagaagatgatgaagatgaacatgatgaaatgtgcacataaatt 2022715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 43378119 - 43378193
Alignment:
Q  116 ttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    ||||||||| |||||||| |||||||||||  |  |||||||| |||||| |||||||||||||||||| ||||||    
T  43378119 ttgtgttgg-ggtctgctgcaataacttgaccatgaagatgatgaagatgaatatgatgaagtgtgcacataaatt 43378193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 29006761 - 29006706
Alignment:
Q  136 aataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    ||||| ||||| ||||||||||| |||||| ||||||||||| |||||| ||||||    
T  29006761 aataatttgataaaaaagatgatcaagatgaatatgatgaagagtgcacataaatt 29006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 2022764 - 2022794
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||||    
T  2022764 acttgaaacctgaaaagtttaatggttatgc 2022794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 35369308 - 35369278
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||||    
T  35369308 acttgaaacctgaaaagtttaatggttatgc 35369278  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 24075619 - 24075704
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    ||||||||  |||||| | |||||||| ||||||||||||||| ||||||||||||||| ||||||  |||||||||  |||||||    
T  24075619 tgttagaacctgtgttaggggtctgctgcaataacttgattaagaagatgataaagatgaatatgacaaagtgtgcatataaattc 24075704  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 21937271 - 21937326
Alignment:
Q  136 aataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    ||||||||||  || |||||||| |||||| |||||||||||||||||| ||||||    
T  21937271 aataacttgaccaagaagatgatgaagatgaatatgatgaagtgtgcacataaatt 21937326  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 24509383 - 24509284
Alignment:
Q  88 ataaatcgaacctaaagattgttaga----atttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgca 183  Q
    ||||||||||||||||||||||| ||     |||||||| | |||||||| ||| |||||||  || |||||||| ||||||  ||||||||||| ||||    
T  24509383 ataaatcgaacctaaagattgttggattttgtttgtgttaggggtctgctgcaaaaacttgaccaagaagatgatgaagatgagtatgatgaagtttgca 24509284  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 2887295 - 2887324
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatg 241  Q
    ||||||||||||||||||||||||||||||    
T  2887295 acttgaaacctgaaaagtttaatggttatg 2887324  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 21937352 - 21937401
Alignment:
Q  193 gttggaaagaggctattgtacttgaaacctgaaaagtttaatggttatgc 242  Q
    ||||| ||||| || ||| |||||||||||||||||||||||||| ||||    
T  21937352 gttgggaagagactgttgcacttgaaacctgaaaagtttaatggtaatgc 21937401  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 24509485 - 24509534
Alignment:
Q  193 gttggaaagaggctattgtacttgaaacctgaaaagtttaatggttatgc 242  Q
    ||||| |||||| | ||| ||||||||||| |||||||||||||||||||    
T  24509485 gttgggaagaggttgttgcacttgaaaccttaaaagtttaatggttatgc 24509534  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 28611983 - 28612044
Alignment:
Q  130 tgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaatt 191  Q
    |||| |||||||||||| || |||||||| || ||| | |||||||||||||||| ||||||    
T  28611983 tgctgcaataacttgatcaagaagatgatgaatatgaacatgatgaagtgtgcacataaatt 28612044  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 192
Target Start/End: Original strand, 49784164 - 49784250
Alignment:
Q  107 tgttagaatttgtgttggaggtctgctacaataacttgattaaaaagatgataaagatgtatatgatg-aagtgtgcacttaaattc 192  Q
    |||| ||||||||||||| |||||||| |||||||||||  || |||||||| || ||| || ||||| |||||||||| |||||||    
T  49784164 tgttggaatttgtgttgggggtctgctgcaataacttgacgaagaagatgatgaacatgaatgtgatgaaagtgtgcacataaattc 49784250  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 52654051 - 52653994
Alignment:
Q  135 caataacttgattaaaaagatgataaagatgtatatgatgaagtgtgcacttaaattc 192  Q
    |||||||||||| || |||||||| || ||| | |||||||||||||||| |||||||    
T  52654051 caataacttgatcaagaagatgatgaaaatgaacatgatgaagtgtgcacataaattc 52653994  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 16272133 - 16272187
Alignment:
Q  126 ggtctgctacaataacttgattaaaaagatgataaagatgtatatgatgaagtgt 180  Q
    |||||||| ||||||||||| ||| ||||||||||||||| | ||||||||||||    
T  16272133 ggtctgctgcaataacttgactaagaagatgataaagatgaacatgatgaagtgt 16272187  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 242
Target Start/End: Original strand, 716162 - 716192
Alignment:
Q  212 acttgaaacctgaaaagtttaatggttatgc 242  Q
    |||||||||||||||||||||||||||||||    
T  716162 acttgaaacctgaaaagtttaatggttatgc 716192  T

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