View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13109_low_36 (Length: 239)

Name: NF13109_low_36
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13109_low_36
NF13109_low_36
[»] chr1 (10 HSPs)
chr1 (20-165)||(48661984-48662129)
chr1 (20-154)||(48629288-48629422)
chr1 (20-143)||(48617762-48617885)
chr1 (23-154)||(48667576-48667707)
chr1 (20-127)||(11547681-11547788)
chr1 (20-165)||(48657018-48657163)
chr1 (20-154)||(48653570-48653704)
chr1 (23-136)||(48585780-48585893)
chr1 (23-136)||(48640353-48640466)
chr1 (191-239)||(48662155-48662203)
[»] chr3 (1 HSPs)
chr3 (20-154)||(19665107-19665241)
[»] chr8 (3 HSPs)
chr8 (21-153)||(27224421-27224553)
chr8 (25-154)||(27228628-27228757)
chr8 (36-138)||(25892474-25892577)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 48661984 - 48662129
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48661984 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 48662083  T
Q  120 ggaaaagaaacaaggaggatatgaatgggagcttcattagacgcca 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  48662084 ggaaaagaaacaaggaggatatgaatgggagcttcattagacgcca 48662129  T

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Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 48629288 - 48629422
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    ||||||||| |||||||||||||| || || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48629288 gtctttgcctgctttctctgttgtagtaaagatgacagaggcaccctttgcagcaagacattttcctagtctaagaagagggtttatgtgtccttgtgct 48629387  T
Q  120 ggaaaagaaacaaggaggatatgaatgggagcttc 154  Q
    |||||||||||||| |||||||||| |||| ||||    
T  48629388 ggaaaagaaacaagtaggatatgaaggggaacttc 48629422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 48617885 - 48617762
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48617885 gtctttgccagctttctctgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgct 48617786  T
Q  120 ggaaaagaaacaaggaggatatga 143  Q
    ||| |||| | ||| |||||||||    
T  48617785 ggataagagataagaaggatatga 48617762  T

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Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 154
Target Start/End: Original strand, 48667576 - 48667707
Alignment:
Q  23 tttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctgga 122  Q
    ||||||| |||| ||||||||| |||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  48667576 tttgccacctttttctgttgtgatgaagatgacagaagcaccctttgcagcaagacatttacctagtctaagaagagggtttatgtgtccttgtgctgga 48667675  T
Q  123 aaagaaacaaggaggatatgaatgggagcttc 154  Q
    ||||||||||||||||| ||||| | ||||||    
T  48667676 aaagaaacaaggaggatgtgaattgaagcttc 48667707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 11547681 - 11547788
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    ||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||    
T  11547681 gtctttgccagctttctttgttgtgatgaagatgacagaagcaccctttgcagcaagacactttgctaatctaagaagagggtttatgtgtccttgtcct 11547780  T
Q  120 ggaaaaga 127  Q
    ||||||||    
T  11547781 ggaaaaga 11547788  T

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Target: chr1; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 48657018 - 48657163
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    |||||||||||||||||  ||||||||||| |||||||| | ||| ||||||||||||||||| |||||| ||||||||| |||||| ||||| | ||      
T  48657018 gtctttgccagctttctgcgttgtggtgaagatgacagaagaaccctttgcagcaagacacttccctagtttaagaagagagtttatatgtccgtatgaa 48657117  T
Q  120 ggaaaagaaacaaggaggatatgaatgggagcttcattagacgcca 165  Q
    ||| |||| |||||||| || |||||||||||||||||||||||||    
T  48657118 ggataagatacaaggagaatctgaatgggagcttcattagacgcca 48657163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 48653570 - 48653704
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    |||||| |||||| | ||||||||| ||||||||||||| ||||| |||||||||| ||||||| |||| ||||| | ||| || |||||||||||||||    
T  48653570 gtcttttccagctctttctgttgtgatgaaaatgacagaagcaccctttgcagcaacacactttgctagactaagcaaaggattaatgtgtccttgtgct 48653669  T
Q  120 ggaaaagaaacaaggaggatatgaatgggagcttc 154  Q
    ||| |||||| |||||||| |||||||||||||||    
T  48653670 ggataagaaataaggaggacatgaatgggagcttc 48653704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 48585780 - 48585893
Alignment:
Q  23 tttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctgga 122  Q
    |||||||||  |||||||||||||||| || |||| |||||| |||||||||||| |||||||||||| || |||| |||||||||||||||||||||||    
T  48585780 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 48585879  T
Q  123 aaagaaacaaggag 136  Q
    ||||| ||||||||    
T  48585880 aaagagacaaggag 48585893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 48640353 - 48640466
Alignment:
Q  23 tttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctgga 122  Q
    |||||||||  |||||||||||||||| || |||| |||||| |||||||||||| |||||||||||| || |||| |||||||||||||||||||||||    
T  48640353 tttgccagccgtctctgttgtggtgaagataacagtggcaccctttgcagcaagatactttcctagtccaacaagatggtttatgtgtccttgtgctgga 48640452  T
Q  123 aaagaaacaaggag 136  Q
    ||||| ||||||||    
T  48640453 aaagagacaaggag 48640466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 48662155 - 48662203
Alignment:
Q  191 cctctcttgagattgcactcgaagattagtaggaacactataaaatggc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48662155 cctctcttgagattgcactcgaagattagtaggaacactataaaatggc 48662203  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 19665241 - 19665107
Alignment:
Q  20 gtctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgct 119  Q
    ||||||||||||||||||||| ||| |||| ||||| || | ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19665241 gtctttgccagctttctctgtagtgatgaagatgactgaagaaccctttgcagcaagacactttgctagtctaagaagagggtttatgtgtccttgtgct 19665142  T
Q  120 ggaaaagaaacaaggaggatatgaatgggagcttc 154  Q
    ||| | || | ||||||||| |||||||| |||||    
T  19665141 ggatatgagataaggaggatgtgaatgggtgcttc 19665107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 153
Target Start/End: Original strand, 27224421 - 27224553
Alignment:
Q  21 tctttgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctg 120  Q
    |||||||||||||||||||||||| |||| || ||||| | ||| ||||  ||||||||||||||||||||||| | ||| |||||||||||||||||||    
T  27224421 tctttgccagctttctctgttgtgatgaagataacagaagaaccctttgatgcaagacactttcctagtctaagcataggatttatgtgtccttgtgctg 27224520  T
Q  121 gaaaagaaacaaggaggatatgaatgggagctt 153  Q
    || | || |||||||| || | || ||||||||    
T  27224521 gatatgatacaaggagaattttaaggggagctt 27224553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 27228628 - 27228757
Alignment:
Q  25 tgccagctttctctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcctagtctaagaagagggtttatgtgtccttgtgctggaaa 124  Q
    ||||||||||||| |||||| |||| || ||||| | ||| ||||  |||||||||||||||| |||||| | ||| ||||||||||||||||||||| |    
T  27228628 tgccagctttctcagttgtgatgaagataacagaagaaccctttgatgcaagacactttcctaatctaagcataggatttatgtgtccttgtgctggata 27228727  T
Q  125 agaaacaaggaggatatgaatgggagcttc 154  Q
     || |||||||| ||||  |||||||||||    
T  27228728 tgatacaaggagaatattgatgggagcttc 27228757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 138
Target Start/End: Complemental strand, 25892577 - 25892474
Alignment:
Q  36 tctgttgtggtgaaaatgacagaggcaccttttgcagcaagacactttcc-tagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaagg 134  Q
    |||||||||||||| |||| ||| |||||  ||||||||||| | ||||| ||| | ||||||| |||||| ||||| |||   ||||||||| ||||||    
T  25892577 tctgttgtggtgaagatgatagatgcaccccttgcagcaagagattttccttagaccaagaagatggtttaggtgtcgttgaaatggaaaagagacaagg 25892478  T
Q  135 agga 138  Q
    ||||    
T  25892477 agga 25892474  T

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