View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13109_low_4 (Length: 726)
Name: NF13109_low_4
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_4 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 105 - 469
Target Start/End: Complemental strand, 27511502 - 27511138
Alignment:
| Q |
105 |
gctgtgtttgatctgttcatgaaacaagttgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
204 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511502 |
gctgtgtttgatctgttcatgaatcaagtcgtcttcaacaaaaaggtgattcgaatcattcaaagccgctaccattggagagagacagaggattatatgc |
27511403 |
T |
|
| Q |
205 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
27511402 |
ttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcgagagaggtggtcgtgaatc |
27511303 |
T |
|
| Q |
305 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511302 |
ctcttgcacgcatgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaag |
27511203 |
T |
|
| Q |
405 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27511202 |
gatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaaggttgaatagaagaa |
27511138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 583 - 714
Target Start/End: Complemental strand, 27510148 - 27510017
Alignment:
| Q |
583 |
gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatctcgaattaa |
682 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27510148 |
gatggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagcttttttataattctgatgttaaaatatcgaattaa |
27510049 |
T |
|
| Q |
683 |
attctaaaataaaggattttgcgatattcttc |
714 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |
|
|
| T |
27510048 |
attctaaaataaaggattttgcgattttcttc |
27510017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 170; Significance: 7e-91; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 155 - 484
Target Start/End: Original strand, 77779 - 78094
Alignment:
| Q |
155 |
tcgaatcattcaaagccgctaccattggagagagacagaggattatatgcttatccgtatgtatatgcctggacgctttaaggaagatgtgaatatcaac |
254 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
77779 |
tcgaatcattcaaagccgctaacgttggagagagacag--gattatatgcttatacgtatgtatatgcctggacgcattaaggaagatgtg--------- |
77867 |
T |
|
| Q |
255 |
gtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgcatgatttaactgggagacattacaagatcgatcagatta |
354 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||| | ||||||||| |||| |||||||||||| || |||||| |
|
|
| T |
77868 |
---tatcagaacactcttagcattaaaggtgagcgaggtggtcgtaaatcctctagcagacttgatttaaccgggaaacattacaagatttattagatta |
77964 |
T |
|
| Q |
355 |
gagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaaggatggggaaactacggaggaaaggaacgacaataatgtgattattgtcaa |
454 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
77965 |
cagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaaggatggggaaactacagagggaaggaacaacaatgatgtgattattgtcaa |
78064 |
T |
|
| Q |
455 |
ggttgaatagaagaatatggtattttcatt |
484 |
Q |
| |
|
||||||||||||||||||||| |||||||| |
|
|
| T |
78065 |
ggttgaatagaagaatatggtcttttcatt |
78094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 5e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 217 - 405
Target Start/End: Complemental strand, 33702465 - 33702282
Alignment:
| Q |
217 |
atatgcctggacgctttaaggaagatgtgaatatcaacgtgtatcagaatactcttagcattaaaggcaagagagatggtcgtgaatcctcttgcacgca |
316 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||||| || ||||||||||||||||| |||||| ||||||| ||||||||||||| | |
|
|
| T |
33702465 |
atatgcctgaacgcttgaaggaagatgtgaatatcaatgtgtaaca-----ctcttagcattaaaggcgagagaggtggtcgtaaatcctcttgcacact |
33702371 |
T |
|
| Q |
317 |
tgatttaactgggagacattacaagatcgatcagattagagctaggatgaaatgtagtgtgctcaaggttgttttgcctaaaataaagg |
405 |
Q |
| |
|
||||||||| |||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33702370 |
tgatttaacagggaaatcttacaagattgatcagattagagctaagatgaaatgtagtgtgctcaaggttgttttgcctaaaatgaagg |
33702282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 585 - 653
Target Start/End: Complemental strand, 33702275 - 33702207
Alignment:
| Q |
585 |
tggtgatagactagtgttgctgtgttaaacattaatgactgcttgaaaattaatgaatttagctttttt |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||| |
|
|
| T |
33702275 |
tggtgatagactagtgttgctgtgttaaacattaatgactaactgaaaactaatgaattaagttttttt |
33702207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University