View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_5 (Length: 698)
Name: NF13109_low_5
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 679
Target Start/End: Original strand, 5325300 - 5325969
Alignment:
| Q |
18 |
caacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctgnnnnnnn--tgcgaga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5325300 |
caacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctgaaaaaaaaatgcgaga |
5325399 |
T |
|
| Q |
116 |
aaagaataaattagcaaaaagaagcttattgacaaaggttataaagaaa-------catgatgttgacttacctgagacagaataattatattcaggaga |
208 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
5325400 |
aaagaataaattagtaaaaagaagcttattgacaaaggttataaagaaaaagacaacatgatgtttacttacctgagacagaataattatactcaggaga |
5325499 |
T |
|
| Q |
209 |
agcaaagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaacattggc |
308 |
Q |
| |
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|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5325500 |
agcaaagagaacactatcagcttcaagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgttcaacattggc |
5325599 |
T |
|
| Q |
309 |
aagtctgaaatatcgatgtactcgatttggataccatcaagaacacttttgcttagctcaatagctacccatgaatagaaaggaaaaaatgtaaaaccat |
408 |
Q |
| |
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|||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||| || | ||||||| |
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| T |
5325600 |
aagtttgaaagatcaatgtactcgatttggataccatcaataacacttttgcttagctcaatagctacccatcaataggaa--aaaatatatgaaaccat |
5325697 |
T |
|
| Q |
409 |
caaatttgttattcaaagactcaaaaatcaaaggttaatttatctacttatgtcaaatcgtcctgccaccgtccgattttttcaacaagttaaacgacag |
508 |
Q |
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||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5325698 |
caaatttattattcaaagactgaaaattcaaaggttaatttatctacttatgtcaaatcgtcctgccaccgtccgattttttcaacaagttcaacgacag |
5325797 |
T |
|
| Q |
509 |
gttaattttgagtttaataggccgacccgacatgttaattccaacttttacatcctaaaattgcgggtttaataagccggcccaatatgctcgacctatt |
608 |
Q |
| |
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||||||||||||||||||||||||||| | || |||||||||||||||| ||||||| |||||| ||||||||| |||||||| | ||||||||||||| |
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| T |
5325798 |
gttaattttgagtttaataggccgacctgtcaggttaattccaacttttccatcctataattgcaggtttaataggccggcccgacctgctcgacctatt |
5325897 |
T |
|
| Q |
609 |
ttacca-ccttacttagtgtctcccctccccctaaacaatattcactcaatctatttcttattttaaattat |
679 |
Q |
| |
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|| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5325898 |
ttgccacccctacttagtgtctcccctccccctaaacaatattcactcaatctatttcttattttaaattat |
5325969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 5351811 - 5351451
Alignment:
| Q |
18 |
caacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagcggggctgnnnnnnntgcgagaaa |
117 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||| |
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|
| T |
5351811 |
caacactcactatggcagcagactttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttagtggagctgaaaaaaatgcaagaaa |
5351712 |
T |
|
| Q |
118 |
agaataaattagcaaaaagaagcttattgacaaaggttataaagaaacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagag |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351711 |
agaataaattagcaaaaagaagcttattgacaaaggttataaagaaacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagag |
5351612 |
T |
|
| Q |
218 |
aacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttccttcttcctcaagatcagtgttcaacattggcaagtctgaa |
317 |
Q |
| |
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||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||| ||| |||||||||||||||||||| || |||| |
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| T |
5351611 |
aacactatcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacattggtaaagttgaa |
5351512 |
T |
|
| Q |
318 |
atatcgatgtactcgatttggataccatcaagaacacttttgcttagctcaatagctaccc |
378 |
Q |
| |
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||||| |||||||| || | | ||| |||| ||| ||||||| |||||||| ||||||| |
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|
| T |
5351511 |
atatcaatgtactcaatatcaacaccctcaaccacatttttgctcagctcaatcgctaccc |
5351451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 163 - 303
Target Start/End: Complemental strand, 5343881 - 5343741
Alignment:
| Q |
163 |
aacatgatgttgacttacctgagacagaataattatattcaggagaagcaaagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttc |
262 |
Q |
| |
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||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||| ||||| | ||||||||| |
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| T |
5343881 |
aacatgatgtttacctacctgaaacagaataattattttcaggagaagcaaagagaaagctatcagctccaagaatctttttccgaaaggattcaacttc |
5343782 |
T |
|
| Q |
263 |
agctggaaaagttccttcttcctcaagatcagtgttcaaca |
303 |
Q |
| |
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| ||||| |||| ||||||| |||||||||||||||||||| |
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| T |
5343781 |
aactggataagtcccttctttctcaagatcagtgttcaaca |
5343741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 5339413 - 5339545
Alignment:
| Q |
178 |
tacctgagacagaataattatattcaggagaagcaaagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttcc |
277 |
Q |
| |
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||||||||| ||||| ||||| |||||||||||||| |||| |||||||||| ||||||| | | |||||| ||||||||||| |||||||| || |
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| T |
5339413 |
tacctgagatggaatagttatactcaggagaagcaaatagaaagctatcagctccaagaatataatcacgaaaatcttcaacttcaagaggaaaagtccc |
5339512 |
T |
|
| Q |
278 |
ttcttcctcaagatcagtgttcaacattggcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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| T |
5339513 |
ttcttcctcaagatcagtgttcaacaatggcaa |
5339545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 5338320 - 5338395
Alignment:
| Q |
18 |
caacactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttag |
93 |
Q |
| |
|
|||||||||| |||||||||| || |||||||| |||||||||||||||||| ||||||||| |||||||||||| |
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| T |
5338320 |
caacactcactatggcagcagttttaccagcccatacatttggtggtcttgatccccaatcaagtgcattctttag |
5338395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 5344790 - 5344718
Alignment:
| Q |
21 |
cactcacaatggcagcaggctttccagcccaaacatttggtggtcttgatgcccaatcaattgcattctttag |
93 |
Q |
| |
|
||||||| ||||| ||||| || ||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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|
| T |
5344790 |
cactcactatggccgcaggtttaccagcccaaacatttggtgatcttgatgcccagtcaagtgcattctttag |
5344718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 178 - 298
Target Start/End: Original strand, 14536649 - 14536769
Alignment:
| Q |
178 |
tacctgagacagaataattatattcaggagaagcaaagagaacgctatcagctgcaagaatcttttgacgaaatgcttcaacttcagctggaaaagttcc |
277 |
Q |
| |
|
|||||| |||||| || ||||| |||||||||||||| ||||| ||||||||| ||||||||| || ||||| |||||||| || |||| ||||||| |
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|
| T |
14536649 |
tacctgtgacagagtagttatactcaggagaagcaaaaagaacactatcagcttgaagaatcttgtggcgaaaagcttcaacaagaggtggataagttcc |
14536748 |
T |
|
| Q |
278 |
ttcttcctcaagatcagtgtt |
298 |
Q |
| |
|
||| | ||||||||||||||| |
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|
| T |
14536749 |
ttcattctcaagatcagtgtt |
14536769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 14535529 - 14535575
Alignment:
| Q |
44 |
ccagcccaaacatttggtggtcttgatgcccaatcaattgcattctt |
90 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
14535529 |
ccagcccaaacatttggtggtctagatgcccaatcaattgcattctt |
14535575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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