View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_6 (Length: 672)
Name: NF13109_low_6
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Original strand, 1537716 - 1538346
Alignment:
| Q |
13 |
aatatcacacagcatttgaatttctttggattagcggctcctcctcctcc------acctcaggtttctgatcaaagcagtagcaaaaccacttattgtg |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||| |||||||| |
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| T |
1537716 |
aatatcacacagcatttgaatttctttggattagcggctcctcctcctcctccaccacctcaagtttctgaccaatgcagtagcaaaaccagttattgtg |
1537815 |
T |
|
| Q |
107 |
gttacagtagtggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcaca |
206 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1537816 |
gttacagtactggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcata |
1537915 |
T |
|
| Q |
207 |
aggaacttaagctgatcgcaaaaatccttccttttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttgtataatcatctt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1537916 |
aggaacttaagctgatcgcaaaaatccttccttttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttgtataatcatctt |
1538015 |
T |
|
| Q |
307 |
tgaaataatgaacaaagactatagaaatgtaaaagttgatgcccaatagaacaaggcattcaatcagagaaccattcctaggtctctgaacaatggttga |
406 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538016 |
tgaaataatgaacaaagactatagaaatgtaaaagttgatgcccaatagaacaaggcattcaatcagagaaccattcctaggtctctgaacaatggttga |
1538115 |
T |
|
| Q |
407 |
aaacagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtcct |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1538116 |
aaacagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtcct |
1538215 |
T |
|
| Q |
507 |
tcaacatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgct |
606 |
Q |
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| T |
1538216 |
tcaacatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataactaaccactgttgcaagcctctgtctatcattgacagagggatgct |
1538315 |
T |
|
| Q |
607 |
caggttgtgttggtggtgcttcttcatcagc |
637 |
Q |
| |
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| T |
1538316 |
caggttgtgttggtggtgcttcttcatcagc |
1538346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 140 - 635
Target Start/End: Complemental strand, 10164737 - 10164263
Alignment:
| Q |
140 |
accacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaacatgcacaaggaacttaagctgatcgcaaaaatccttcctt |
239 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| || |||||| ||||||||||| ||||||||||||||| |
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| T |
10164737 |
accacaacagtaacagatgacagctattatcccccaaaacagacatcttatcccagtaacattcaaaaggaatttaagctgatcccaaaaatccttcctt |
10164638 |
T |
|
| Q |
240 |
ttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttgtataatcatctttgaaataatgaacaaagactatagaaatgtaaa |
339 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| | || |
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| T |
10164637 |
ttgaagatgatgattaagacaatgaaagaaacccataatattatggcatattttgtataatcatctttg----------------------aaatattaa |
10164560 |
T |
|
| Q |
340 |
agttgatgcccaat-agaacaaggcattcaatcagagaaccattcctaggtctctgaacaatggttgaaaacagagagaaaacaaagaggagatgaaaag |
438 |
Q |
| |
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||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10164559 |
agttgatgcccaaacagaacaagacattcaaacagggaaccattcctaggtctctgaacaatggttgcaaacagagagaaaacaaagaggagatgaaaag |
10164460 |
T |
|
| Q |
439 |
cagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttcaacatttgtgaaaagaaaactagaaatgag |
538 |
Q |
| |
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|||| | ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||||| |||||||||| ||| ||||||||||| |||||||||| |
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| T |
10164459 |
cagttacaaaggaaaaaaacgaatttttgacatctttatggttaatgagatagtgatggatcggtccttcaaggtttttgaaaagaaaagtagaaatgag |
10164360 |
T |
|
| Q |
539 |
aagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcaggttgtgttggtggtgcttcttcatca |
635 |
Q |
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||||| ||||| |||||| |||| ||||||||||||||||||| || |||||||||||||| ||||||| ||||||| ||||||||||||||||||| |
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| T |
10164359 |
aagaaatagtttgattgagtaactaaccactgttgcaagcctccgtgtatcattgacagagtgatgctcgggttgtggtggtggtgcttcttcatca |
10164263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 99 - 313
Target Start/End: Complemental strand, 10164766 - 10164564
Alignment:
| Q |
99 |
ttattgtggttacagtagtggtaacaaccaccacaacagtaaccacaacagtaacagatgacagctattatcccccaaaacagataacttatcccagtaa |
198 |
Q |
| |
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||||||||| |||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
10164766 |
ttattgtggctacaatattggtaacaaccaccacaacag------------taacagatgacagctattatcccccaaaacagacatcttatcccagtaa |
10164679 |
T |
|
| Q |
199 |
catgcacaaggaacttaagctgatcgcaaaaatccttccttttgaagatgatgattaacacaatgaaagaaacccagaatattatagcatattttgtata |
298 |
Q |
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||| || |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
10164678 |
cattcaaaaggaatttaagctgatcccaaaaatccttccttttgaagatgatgattaagacaatgaaagaaacccataatattatggcatattttgtata |
10164579 |
T |
|
| Q |
299 |
atcatctttgaaata |
313 |
Q |
| |
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||||||||||||||| |
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|
| T |
10164578 |
atcatctttgaaata |
10164564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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