View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13109_low_7 (Length: 646)
Name: NF13109_low_7
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 221 - 550
Target Start/End: Complemental strand, 53983744 - 53983412
Alignment:
| Q |
221 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctc- |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53983744 |
gaattgtttgataacgtgactcattatctagtttttgtgagtatctctttaatttttaagtagagtcattccttacttttaagaaatgaaaatgatctca |
53983645 |
T |
|
| Q |
320 |
--ttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53983644 |
acttagaaagcaggtgaagatttccaaagaataaaatactattcttgaaggtaagatgtataaaattatttggcaaaatttggtgcaagggatgatcaag |
53983545 |
T |
|
| Q |
418 |
agtttgtcattatgcaagcctcctcgagctttatgtcttatctttctttgcgggtgttgttggagttttggtttttacaatgaaacaaattcattcnnnn |
517 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53983544 |
agtttgtcattatgcaagcctcctccagctttatgtcttatctttctttgcgggtgttgttggagttttggtttttacaatgaaacaaattcattaaaaa |
53983445 |
T |
|
| Q |
518 |
nnngccagagatcaagacagatggttgttatat |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53983444 |
aaagccagagatcaagacagatggttgttatat |
53983412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 53983943 - 53983780
Alignment:
| Q |
1 |
catgaaattatctggatccaactgcaaggattatttcaatctnnnnnnnnnnnnnn-tcaaacagccaatttcgcaacaaaagatgtataagatccacta |
99 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53983943 |
catgaaattatctggatccaactacaaggattatttcaatctaaaaaaaataaaaaataaaacagccaatttcacaacaaaagatgtataagatccacta |
53983844 |
T |
|
| Q |
100 |
gaacttgaacattttggaaagggtcgggggtgcatgttaggactccatttaaattgagatagat |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
53983843 |
gaacttgaacattttggaaagggtcgggggtgcatgtaaggactccatttaaattgagatagat |
53983780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 53983356 - 53983296
Alignment:
| Q |
568 |
aatggtttaaacgacactacaagaaattgttattaagtggtgtttgattagctacggttaa |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53983356 |
aatggtttaaacgacactacaagaaattgttattaagtggtgtttgattagcaacggttaa |
53983296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University