View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13109_low_9 (Length: 612)
Name: NF13109_low_9
Description: NF13109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13109_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 117 - 597
Target Start/End: Original strand, 14175761 - 14176241
Alignment:
| Q |
117 |
gaagcttgatattgggattagcgaatcataatcgtttatcggctaaaattgaggtgggttcctttaggtttagcattaccaaatgtatttagtgtttggc |
216 |
Q |
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| T |
14175761 |
gaagcttgatattgggattagcgaatcataatcgtttatcggctaaaattgaggtgggttcctttaggtttagcattaccaaatgtatttagtgtttggc |
14175860 |
T |
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| Q |
217 |
caatttatgattagttactaactataggtttagataccaatataagaggagtgctaggtacccttgtactcctaatattcatcaaacactgttttgcaga |
316 |
Q |
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| T |
14175861 |
caatttatgattagttattaactataggtttagataccaaaataaaaggagtgctaggtacccttgtactcctaatattcatcaaacactgttttggaga |
14175960 |
T |
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| Q |
317 |
atattaaatgtgcataataatgttagatccctttcccttgattattatgctcttattagaataacacttcacctgatatagtaattggtgtaaatgaact |
416 |
Q |
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| T |
14175961 |
atattaaatgtgcataataatgttagatccctttcccttgattattatgctcttattagaataacacttcacctgatatagtaattggtgtaaatgaact |
14176060 |
T |
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| Q |
417 |
cagataaattgtgtgacacaccattaaatattgtcgaattatgtataattatgattaatatatgaatgtgtatgtgaaatgatcactggcagacaagatt |
516 |
Q |
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| T |
14176061 |
cagataaattgtgtgacacaccattaaatattgtcgagttatgtataattatgattaataaatgaatatgtatgtgaaatgatcactggcagacaggatt |
14176160 |
T |
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| Q |
517 |
cccctattactactaacaccctagatggagtaagaactcactgaggcttagagcttgaatagtttatatgactatgttgat |
597 |
Q |
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| T |
14176161 |
cccctatgactactaacaccctaggtggagtaagaactcactgaggcttagagcttgaatagtttatatgactatgttgat |
14176241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 14175714 - 14175768
Alignment:
| Q |
35 |
ttggtaagagtttggattgatggttggactgaatttgcagcttgcgggaggcttg |
89 |
Q |
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| T |
14175714 |
ttggtaagagtttggattgatggttggactgaatttggagcttgcgggaagcttg |
14175768 |
T |
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