View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_high_13 (Length: 354)

Name: NF1310_high_13
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_high_13
NF1310_high_13
[»] chr1 (4 HSPs)
chr1 (30-215)||(15593484-15593668)
chr1 (223-279)||(15593324-15593380)
chr1 (300-345)||(15593254-15593299)
chr1 (35-112)||(861889-861966)
[»] chr7 (3 HSPs)
chr7 (25-73)||(42720925-42720973)
chr7 (42-85)||(9483377-9483420)
chr7 (38-100)||(31924415-31924477)
[»] chr8 (2 HSPs)
chr8 (36-96)||(32145224-32145284)
chr8 (31-75)||(25831682-25831726)
[»] chr4 (2 HSPs)
chr4 (35-73)||(5096131-5096169)
chr4 (34-99)||(43093534-43093599)
[»] chr2 (1 HSPs)
chr2 (35-73)||(12940970-12941008)
[»] chr3 (3 HSPs)
chr3 (42-111)||(26656716-26656785)
chr3 (40-121)||(51733135-51733216)
chr3 (57-121)||(49636813-49636877)
[»] chr6 (1 HSPs)
chr6 (31-107)||(10038445-10038520)
[»] chr5 (2 HSPs)
chr5 (49-101)||(9895147-9895199)
chr5 (25-85)||(31164573-31164633)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 30 - 215
Target Start/End: Complemental strand, 15593668 - 15593484
Alignment:
Q  30 tacatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctacataggtctt 129  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  15593668 tacatgacattgacacattgacaccactaataatttgaaaaaatagattaatcgaacatagtcacatgcgtttgtgtcgtgtcagtgctacataggtctt 15593569  T
Q  130 gattaatcaactttcctatcaatgcggcagactataagtttccaattcaagcaactacaaagcctgtaaatcccaatatactagca 215  Q
    |||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||| ||||  ||||||||    
T  15593568 gattcatcaactttcctatcaatgtgggagactataag-ttccaattcaagtaactacaaagcctgtaaattccaacttactagca 15593484  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 15593380 - 15593324
Alignment:
Q  223 gagcaagaatgaagtgttgtcacttgccatcactcatcctggtttcctctattaggg 279  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||||||||| ||||    
T  15593380 gagcaagaatgaagtgttgtcacttgcaatcactcaccgtggtttcctctatcaggg 15593324  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Complemental strand, 15593299 - 15593254
Alignment:
Q  300 gaacaagccaccacaccatcctcatcagttccattccacttcatat 345  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||    
T  15593299 gaacaagccaccacaccatcctcgttagttccattccacttcatat 15593254  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 861966 - 861889
Alignment:
Q  35 gacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtc 112  Q
    ||||| ||||||||||||| | |||||||||||||||||   | ||||||| |||||||| |||| | | ||||||||    
T  861966 gacatagacacgttgacactagtaataatttgaaaaaatgacaaaattgaaagtagtcacgtgtgatggggtcgtgtc 861889  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 42720973 - 42720925
Alignment:
Q  25 catcatacatgacattgacacgttgacaccactaataatttgaaaaaat 73  Q
    ||||| |||||||| ||||||||||||||| ||||||||||||||||||    
T  42720973 catcagacatgacactgacacgttgacaccgctaataatttgaaaaaat 42720925  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 9483377 - 9483420
Alignment:
Q  42 acacgttgacaccactaataatttgaaaaaatagaataattgaa 85  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||    
T  9483377 acacattgacaccaataataatttgagaaaatagaataattgaa 9483420  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 100
Target Start/End: Original strand, 31924415 - 31924477
Alignment:
Q  38 attgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgt 100  Q
    |||||||||||||||||  ||||||||| | ||||||||| |||||||  || ||||||||||    
T  31924415 attgacacgttgacaccgataataatttaagaaaatagaacaattgaatataatcacatgtgt 31924477  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 32145224 - 32145284
Alignment:
Q  36 acattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacat 96  Q
    |||||||||| || |||||| ||||||||||| ||||| |||||||| |||||| ||||||    
T  32145224 acattgacactttaacaccagtaataatttgagaaaatggaataattaaacgtaatcacat 32145284  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
Q  31 acatgacattgacacgttgacaccactaataatttgaaaaaatag 75  Q
    |||| |||||||||||| ||||||||||||||||| | |||||||    
T  25831726 acataacattgacacgtagacaccactaataatttaagaaaatag 25831682  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
Q  35 gacattgacacgttgacaccactaataatttgaaaaaat 73  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  5096169 gacattgacacgtcgacaccgctaataatttgaaaaaat 5096131  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 43093599 - 43093534
Alignment:
Q  34 tgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtg 99  Q
    ||||| ||||||||  |||||  ||||||||||||||||| | ||||||||| ||| |||||||||    
T  43093599 tgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
Q  35 gacattgacacgttgacaccactaataatttgaaaaaat 73  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  12941008 gacactgacacgttgacacaactaataatttgaaaaaat 12940970  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 26656785 - 26656716
Alignment:
Q  42 acacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgt 111  Q
    ||||||||||| || || ||||||| ||||||| ||||||| || |||  ||||||||||||||| ||||    
T  26656785 acacgttgacaacagtagtaatttggaaaaataaaataattcaatgtaaccacatgtgtttgtgttgtgt 26656716  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 51733135 - 51733216
Alignment:
Q  40 tgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 121  Q
    ||||| |||||||||  |||||| |||| ||||||||||||||||||||   || ||||||  |||| ||||| ||||||||    
T  51733135 tgacaggttgacaccgataataacttgagaaaatagaataattgaacgttaccagatgtgtcggtgttgtgtcggtgctaca 51733216  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 49636877 - 49636813
Alignment:
Q  57 taataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtcgtgtcagtgctaca 121  Q
    ||||||||||| |||||  | |||||||| ||| ||||||| | | |||||||||||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgtcagtgctaca 49636813  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 10038520 - 10038445
Alignment:
Q  31 acatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtttgtgtc 107  Q
    |||||||||||||||||| |||||  |||||  | || |||||||||||||||||  || ||||||||||| |||||    
T  10038520 acatgacattgacacgttaacaccggtaatacct-gagaaaatagaataattgaatataatcacatgtgttggtgtc 10038445  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 101
Target Start/End: Original strand, 9895147 - 9895199
Alignment:
Q  49 gacaccactaataatttgaaaaaatagaataattgaacgtagtcacatgtgtt 101  Q
    ||||||| ||||||||||| |||||| | || ||||||||| |||||||||||    
T  9895147 gacaccagtaataatttgagaaaataaattatttgaacgtaatcacatgtgtt 9895199  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 31164573 - 31164633
Alignment:
Q  25 catcatacatgacattgacacgttgacaccactaataatttgaaaaaatagaataattgaa 85  Q
    ||||| |||||| | ||||||||||||| || ||||||||| |||||||| | ||||||||    
T  31164573 catcagacatgatactgacacgttgacatcagtaataattttaaaaaataaattaattgaa 31164633  T

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