View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_18 (Length: 343)
Name: NF1310_high_18
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 26266082 - 26265836
Alignment:
| Q |
12 |
atgaaagagcaaatgctgcatgtatcgcagcaccaatgggaagaacatcttcatcaataaaatagtgaggactatgagctgaatatatggatccaacctt |
111 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26266082 |
atgaaagagcaaatgctgcatgtatcgcagcaccaattggaagaacatcttcatcaataaaatagtgaggactatgagctgaatatatggatccaacctt |
26265983 |
T |
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| Q |
112 |
ctcattttgtatacctaagaggaaaaatgagccgggaactttttccaagtaaaatgcaaaatcttcacttgctgtgtaggttggtgctaattttatgttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265982 |
ctcattttgtatacctaagaggaaaaatgagccgggaactttttccaagtaaaatgcaaaatcttcacttgctgtgtaggttggtgctaattttatgttc |
26265883 |
T |
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| Q |
212 |
tcctctccaacaatcatacttgatgcttgtcttccaagttggtgtat |
258 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26265882 |
tcttctccaacaatcatacttgatgcttgtcttccaagttggtgtat |
26265836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 231
Target Start/End: Original strand, 31836990 - 31837209
Alignment:
| Q |
12 |
atgaaagagcaaatgctgcatgtatcgcagcaccaatgggaagaacatcttcatcaataaaatagtgaggactatgagctgaatatatggatccaacctt |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| ||| |
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| T |
31836990 |
atgaaagagcaaatgctgcatgtattgcagcaccaatgggaagaacatcttcatcaatgaaaaattgaggactatgagctgaatatatggatccactctt |
31837089 |
T |
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| Q |
112 |
ctcattttgtatacctaagaggaaaaatgagccgggaactttttccaagtaaaatgcaaaatcttcacttgctgtgtaggttggtgctaattttatgttc |
211 |
Q |
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||||||| ||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||| ||||| | | |||| ||||||||||||| |
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| T |
31837090 |
ttcattttttatacctaaaaagaaaaatgagccaggcactttttccaagtaaaatgcaaaatcttcactccctgtgacgatgggtgataattttatgttc |
31837189 |
T |
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| Q |
212 |
tcctctccaacaatcatact |
231 |
Q |
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|| ||||||||||||||||| |
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| T |
31837190 |
tcttctccaacaatcatact |
31837209 |
T |
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