View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1310_high_25 (Length: 301)

Name: NF1310_high_25
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1310_high_25
NF1310_high_25
[»] chr2 (3 HSPs)
chr2 (14-256)||(6531576-6531818)
chr2 (23-144)||(8420613-8420734)
chr2 (26-122)||(33439568-33439663)
[»] scaffold0026 (1 HSPs)
scaffold0026 (14-127)||(92793-92906)
[»] chr6 (1 HSPs)
chr6 (20-144)||(6468169-6468293)
[»] chr7 (5 HSPs)
chr7 (18-144)||(385306-385433)
chr7 (14-122)||(2677277-2677384)
chr7 (26-143)||(24935377-24935498)
chr7 (25-140)||(12286930-12287042)
chr7 (180-212)||(2677194-2677226)
[»] chr4 (3 HSPs)
chr4 (14-127)||(25809779-25809892)
chr4 (20-118)||(42391576-42391674)
chr4 (20-126)||(38216799-38216905)
[»] chr1 (2 HSPs)
chr1 (21-144)||(26518420-26518535)
chr1 (14-144)||(11830232-11830365)
[»] chr3 (1 HSPs)
chr3 (33-103)||(40318133-40318204)
[»] chr5 (2 HSPs)
chr5 (20-144)||(578418-578546)
chr5 (55-144)||(37073301-37073390)
[»] scaffold0369 (1 HSPs)
scaffold0369 (26-111)||(8863-8948)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 14 - 256
Target Start/End: Original strand, 6531576 - 6531818
Alignment:
Q  14 atattgatcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattaga 113  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  6531576 atattaatcagcttcactgtacttacactatagaatgagggaaatattatactttttaaaattgaggagtaaaatgtggtgatttcttata-acattaga 6531674  T
Q  114 attcagtacaatcctgaaaattaacaacaacnnnnnnntaaattgattttg-nnnnnnnnnnnnnnnggaattagatgagatttagggatttgtggatta 212  Q
    |||||||||||||||||||||||||||||||       |||||||||||||                |||||||||||||||||||||||||||||||||    
T  6531675 attcagtacaatcctgaaaattaacaacaacaaaaaaataaattgattttgaacaaaaaaaaaaaagggaattagatgagatttagggatttgtggatta 6531774  T
Q  213 ttattgtcaaattagaaattggaccaaatatccacgctaagaat 256  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  6531775 atattgtcaaattagaaattggaccaaatatccacgctaagaat 6531818  T

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Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 8420613 - 8420734
Alignment:
Q  23 agcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtac 122  Q
    ||||||| |||| || |||||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||| ||| ||||||||||| |||||    
T  8420613 agcttcagtgcattttcactatagaatgagagaaagattatactttttggaattgatgagtaaaatgtggtgatttctaataaacattagaatttagtac 8420712  T
Q  123 aatcctgaaaattaacaacaac 144  Q
    | |||  | |||||||||||||    
T  8420713 agtccatataattaacaacaac 8420734  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 33439663 - 33439568
Alignment:
Q  26 ttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtac 122  Q
    ||||| |||||||||||||  ||||| ||||| |||||| ||||| |||||||||| ||||||||||| |||||||||| ||||||||||| |||||    
T  33439663 ttcaccgcacttacactatt-aatgaaggaaagattataatttttaaaattgaggaataaaatgtggtaatttcttataaacattagaatttagtac 33439568  T

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Target: scaffold0026 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 92793 - 92906
Alignment:
Q  14 atattgatcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattaga 113  Q
    ||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  92793 atattaatcagtttcactacacttacactataaaatgagggaaatattatactttttgaaattaaggagtaaaatatgatgattttttataaacattaga 92892  T
Q  114 attcagtacaatcc 127  Q
    ||| ||||||||||    
T  92893 atttagtacaatcc 92906  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 6468169 - 6468293
Alignment:
Q  20 atcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcag 119  Q
    ||||||||||||| ||||||||||||||| ||| |||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||| ||||||     
T  6468169 atcagcttcactgtacttacactatagaacgagagaaaaattatactttttgaaaatgaggagtaaaatatggtgatttcttataaacattacaattcat 6468268  T
Q  120 tacaatcctgaaaattaacaacaac 144  Q
    |||||| |  | |||||||||||||    
T  6468269 tacaatacaaagaattaacaacaac 6468293  T

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Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 385306 - 385433
Alignment:
Q  18 tgatcagcttcactgcacttacactatagaatgagggaaatattatac-tttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaatt 116  Q
    |||| ||||||| |||||||||| |||||||||||||||||||||||| |||||| |||||||| ||||||| |||  |||||||||| |||||||||||    
T  385306 tgattagcttcattgcacttacattatagaatgagggaaatattatacgtttttggaattgaggggtaaaatatggcaatttcttataaacattagaatt 385405  T
Q  117 cagtacaatcctgaaaattaacaacaac 144  Q
     |||||||||| || |||||||||||||    
T  385406 aagtacaatccagagaattaacaacaac 385433  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 2677384 - 2677277
Alignment:
Q  14 atattgatcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattaga 113  Q
    ||||| |||||||||  || |||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||    
T  2677384 atattaatcagcttcgttgtacttacactatagaatgaaggaaacattatactttttggaattgaggagtaaaatgtgat-atttcttataaacattaga 2677286  T
Q  114 attcagtac 122  Q
    |||||||||    
T  2677285 attcagtac 2677277  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 24935377 - 24935498
Alignment:
Q  26 ttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttctt----atatacattagaattcagta 121  Q
    |||| |||| |||||||||||||||| ||||| |||||| |||||| |||||||||||||||||||||||||||||    ||| ||||||| ||||| ||    
T  24935377 ttcattgcatttacactatagaatgatggaaagattataatttttggaattgaggagtaaaatgtggtgatttcttataaataaacattagcattcatta 24935476  T
Q  122 caatcctgaaaattaacaacaa 143  Q
     ||| | |||||||||||||||    
T  24935477 taattcagaaaattaacaacaa 24935498  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 12287042 - 12286930
Alignment:
Q  25 cttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaa 124  Q
    |||||| |||||||||| |||||| ||| |||| |||||| ||||||||||| || ||||||||   |||||||||||||   |||| ||||||| ||||    
T  12287042 cttcaccgcacttacaccatagaacgagagaaagattataatttttgaaatttagaagtaaaat---gtgatttcttataattattataattcagaacaa 12286946  T
Q  125 tcctgaaaattaacaa 140  Q
    |||  |||||||||||    
T  12286945 tccataaaattaacaa 12286930  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 2677226 - 2677194
Alignment:
Q  180 ggaattagatgagatttagggatttgtggatta 212  Q
    |||||||||||||||||||||||||| ||||||    
T  2677226 ggaattagatgagatttagggatttgaggatta 2677194  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 25809892 - 25809779
Alignment:
Q  14 atattgatcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattaga 113  Q
    ||||| ||||| |||||| |||||||| |||| ||||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||| ||||||||    
T  25809892 atattaatcagtttcactacacttacattataaaatgagggaaatattatactttttggaattaaggagtaaaatgtgatgattttttataaacattaga 25809793  T
Q  114 attcagtacaatcc 127  Q
    ||| | ||||||||    
T  25809792 atttaatacaatcc 25809779  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 42391576 - 42391674
Alignment:
Q  20 atcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattca 118  Q
    |||| ||| |||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||| | || |||||||||  |||||||||||||    
T  42391576 atcaactttactgcagttacactatagaatgtgggaaaaattatactttttgaaattgaggagtaaaatatagtcatttcttatgaacattagaattca 42391674  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 126
Target Start/End: Complemental strand, 38216905 - 38216799
Alignment:
Q  20 atcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcag 119  Q
    |||||||| | |||||||||| | |||||||||||||| |||||| | |||| ||| |||||||||||||||||||||| |||||  ||||| ||||||     
T  38216905 atcagcttgagtgcacttacattgtagaatgagggaaagattatattctttggaatggaggagtaaaatgtggtgatttgttataagcattaaaattcaa 38216806  T
Q  120 tacaatc 126  Q
    |||||||    
T  38216805 tacaatc 38216799  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 26518535 - 26518420
Alignment:
Q  21 tcagcttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagt 120  Q
    |||||||||||||||||||||| ||||||||        |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |    
T  26518535 tcagcttcactgcacttacactctagaatga--------ttatactttttgaaattgaggagtaaaatgtgatgatttcttataaacattagaattcaat 26518444  T
Q  121 acaatcctgaaaattaacaacaac 144  Q
    |||||||    |||||||||||||    
T  26518443 acaatccacgcaattaacaacaac 26518420  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 11830365 - 11830232
Alignment:
Q  14 atattgatcagcttcactgcacttacactatagaatgagg--gaaatattat-actttttgaaattgaggagtaaaatgtggtgatttcttatatacatt 110  Q
    ||||| |||| |||||||||||||||||  |||||| |||   ||| ||||| | |||||| |||||||||||||||||||||||||||||||| |||||    
T  11830365 atattaatcaacttcactgcacttacaccgtagaataaggaaaaaaaattataattttttggaattgaggagtaaaatgtggtgatttcttataaacatt 11830266  T
Q  111 agaattcagtacaatcctgaaaattaacaacaac 144  Q
    |||||||||||||||||  | |||| ||||||||    
T  11830265 agaattcagtacaatccaaagaattgacaacaac 11830232  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 40318204 - 40318133
Alignment:
Q  33 cacttacactatagaatgagggaaatattata-ctttttgaaattgaggagtaaaatgtggtgatttcttat 103  Q
    |||||||||| |||||||||||||||||||||  ||||||||||||||| ||| ||||||||||||| ||||    
T  40318204 cacttacactttagaatgagggaaatattatatttttttgaaattgaggcgtagaatgtggtgattttttat 40318133  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 578418 - 578546
Alignment:
Q  20 atcagcttcactgcacttacactatagaatgag-ggaaatattatacttttt---gaaattgaggagtaaaatgtggtgatttcttatatacattagaat 115  Q
    ||||||||||||||||||||||||||||||||  || ||  || | ||||||   | || ||| ||||||||||||||||| ||||||| ||| || |||    
T  578418 atcagcttcactgcacttacactatagaatgatcggtaaggttgtgcttttttttggaactgaagagtaaaatgtggtgatctcttataaacactaaaat 578517  T
Q  116 tcagtacaatcctgaaaattaacaacaac 144  Q
    |||||||||||  || |||||||||||||    
T  578518 tcagtacaatctagagaattaacaacaac 578546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 37073301 - 37073390
Alignment:
Q  55 aaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacattagaattcagtacaatcctgaaaattaacaacaac 144  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||  |||| ||| ||||   || |||||||||||||    
T  37073301 aaatattatactttttagaattgacgagtaaaatgtggtgatttcttataaacattgtaatttagttcaatatagagaattaacaacaac 37073390  T

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Target: scaffold0369 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 8948 - 8863
Alignment:
Q  26 ttcactgcacttacactatagaatgagggaaatattatactttttgaaattgaggagtaaaatgtggtgatttcttatatacatta 111  Q
    |||||| ||||| ||||||| ||||||| ||||||||||||| ||| |||| | |||||||||||||| |||| ||||| ||||||    
T  8948 ttcacttcacttgcactatataatgaggaaaatattatacttgttggaattaatgagtaaaatgtggtaatttgttataaacatta 8863  T

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