View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_27 (Length: 277)
Name: NF1310_high_27
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 9067114 - 9067012
Alignment:
| Q |
152 |
ccacagagaccgtgtttttcggggtcggcgtcttgctgacggtggtgatgttgatcagaagcttcttacgttttctccagataacaccacgtaccagatt |
251 |
Q |
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| T |
9067114 |
ccacagagaccgtgtttttcggggtcggcgtcttgctgacggtggtgatgttgatcagaagcttcttacgttttctccagataacaccacctaccagatt |
9067015 |
T |
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| Q |
252 |
agt |
254 |
Q |
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||| |
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| T |
9067014 |
agt |
9067012 |
T |
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Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 6250263 - 6250184
Alignment:
| Q |
72 |
gtccaataatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagca |
151 |
Q |
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| T |
6250263 |
gtccaaaaatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagca |
6250184 |
T |
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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 39427964 - 39428036
Alignment:
| Q |
79 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagca |
151 |
Q |
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| T |
39427964 |
aatataacctgcaactttggcaattccaagtgctagaccaattagggaatatgtgaaagacatgactgcagca |
39428036 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 44315600 - 44315664
Alignment:
| Q |
79 |
aatataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatga |
143 |
Q |
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| T |
44315600 |
aatataacctgcaactttggcaattgctagtccaaggccaataaaggaataggtgaaagacatga |
44315664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 44323537 - 44323608
Alignment:
| Q |
80 |
atataacctgcaactttggcaattccaagagctagaccaattaaggaatatgtgaaagacatgaatgcagca |
151 |
Q |
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||||||||||||||||||| |||||||||||| ||| ||||| ||| || ||||||||||| ||||||| |
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| T |
44323537 |
atataacctgcaactttggaaattccaagagcaagagcaattgtggagtagaagaaagacatgactgcagca |
44323608 |
T |
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