View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1310_high_30 (Length: 253)
Name: NF1310_high_30
Description: NF1310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1310_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 50580661 - 50580798
Alignment:
| Q |
35 |
gtacgcaattttttctttcttaattgtttaatgagaatatcaacatcatatgataatgtttacaactatatatagtatgtatgcacataaatcgcataag |
134 |
Q |
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| T |
50580661 |
gtacgcaattttttctttcttaattgtttaatgagaatatcaacatcattttataatgtttacaactatatatagtatgtatgcacataaatcgcataag |
50580760 |
T |
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| Q |
135 |
gtttatttgggactaaaataatcatacaaggtgtcctt |
172 |
Q |
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| T |
50580761 |
gtttatttgggactaaaataatcatacaaggtgtcctt |
50580798 |
T |
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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 50580812 - 50580848
Alignment:
| Q |
185 |
atcatataaggttatacacaatagtgcgcgcgcgtgt |
221 |
Q |
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| T |
50580812 |
atcatataaggttatacacactagtgcgcgcgtgtgt |
50580848 |
T |
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